Table 1 The Root Mean Squared Error (RMSE) for the alignment strategies tested
From: High resolution measurement of DUF1220 domain copy number from whole genome sequence data
Alignment Strategy | Total | CON1 | CON2 | CON3 | HLS1 | HLS2 | HLS3 |
|---|---|---|---|---|---|---|---|
| Â | (542) | (66) | (32) | (32) | (136) | (130) | (146) |
Best Alignment | 3.66 | 1.55 | 0.91 | 0.26 | 0.99 | 1.9 | 1.67 |
Multiread Correction | 7.73 | 1.19 | 1.14 | 0.31 | 1.75 | 2.96 | 2.93 |
Align All/bowtie1 | 46.8 | 18.4 | 9.6 | 66.2 | 37.1 | 34.7 | 32.3 |
Align All/mrsFast | 103.1 | 37.8 | 8.7 | 23.5 | 42.8 | 40.5 | 42.7 |