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Fig. 3 | BMC Genomics

Fig. 3

From: Mining sequence variations in representative polyploid sugarcane germplasm accessions

Fig. 3

Simulation of read depth for single nucleotide polymorphism (SNP) calling. a Relationship between the expected number of reads and the sequencing depth required for minor alleles of single dose SNPs with different ploidy levels, hexaploid (6×), octoploid (8×), decaploid (10×), and dodecaploid (12×). b The average percentages of SNPs called with randomly sub-sampled read sets (20, 30, 40, 50, 60, 70, 80, and 90%) compared to the whole read set. The standard deviation of 10 times subsampled results were labeled as bars at the data points

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