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Table 1 Species, ploidy levels, clean reads, uniquely mapped reads, uniquely mapped reads in genic regions and estimated depth per allele of the 14 accessions

From: Mining sequence variations in representative polyploid sugarcane germplasm accessions

Clone name Species Ploidy level Reads in million Estimated number of reads per allele dose
Clean reads Uniquely mapped reads (% of clean reads) Uniquely mapped reads in genic regions (% of uniquely mapped)
IND81–14 S. spontaneous 6x 4.5 1.4 (33.1) 1.2 (85.7) 7.0
US57–060 E. rufipilu 6x 3.9 1.3 (33.3) 1.0 (76.9) 5.8
US61–037 Unknown 6x 3.6 1.2 (33.3) 1.0 (83.3) 5.8
Kalimpon E. procerum 6x 4.0 1.2 (30.0) 1.0 (83.3) 5.8
SES196 S. spontaneum 8x 4.0 1.3 (32.5) 1.1 (84.6) 4.8
TekchaOk S. sinense 8x 4.1 1.3 (31.7) 1.1 (84.6) 4.8
NG57–054 S. robustum 8x 6.2 2.1 (33.9) 1.8 (85.7) 7.9
P-MAG-84 S. officinarum 8x 4.2 1.4 (33.3) 1.2 (85.7) 5.3
Pathri S. barberi 8x 6.0 1.9 (31.7) 1.6 (84.2) 7.0
NG96–024 S. officinarum 8x 4.2 1.4 (33.3) 1.2 (85.7) 5.3
Q050 Saccharum hybrid 12x 4.3 1.4 (35.8) 1.0 (83.3) 2.9
R570 Saccharum hybrid 12x 5.0 1.6 (32.0) 1.4 (87.5) 4.1
CP95–1039 Saccharum hybrid 12x 11.3 3.7 (32.7) 3.2 (86.4) 9.3
CP88–1762 Saccharum hybrid 12x 13.0 4.3 (33.1) 3.7 (86.0) 10.8
Average    5.6 1.8 (32.4) 1.5 (83.3) 6.2