Skip to main content

Table 1 Raw reads and quality control of reads for N. norvegicus libraries

From: Sex and tissue specific gene expression patterns identified following de novo transcriptomic analysis of the Norway lobster, Nephrops norvegicus

Tissue

Sex

Number of raw reads

Raw read length

%GC

Number of reads after trimming

Read length after trimming

Testis

M

47,454,625

151

44

44,384,279

26–143

Ovary

MF

56,859,898

151

43

53,448,056

26–143

IF

52,854,378

151

48

49,655,513

26–143

Vas Deferens

M

49,222,546

151

43

46,802,691

26–143

Hepatopancreas

M

56,240,204

151

43

52,803,977

26–143

MF

54,715,141

151

46

50,574,033

26–143

IF

52,217,561

151

46

48,752,848

26–143

Eyestalk

M

44,910,345

151

43

41,968,679

26–143

MF

45,799,203

151

42

42,121,851

26–143

IF

53,668,850

151

42

49,410,048

26–143

Brain

M

58,405,643

151

42

54,423,042

26–143

MF

67,530,741

151

42

62,997,606

26–143

IF

61,357,339

151

42

57,343,088

26–143

Thoracic ganglia

M

47,227,119

151

41

43,723,658

26–143

MF

58,418,219

151

43

54,460,212

26–143

IF

49,303,270

151

42

45,710,029

26–143

Data from a previous study [7]

Eyestalk

ML

87,830,082

101

41

84,425,620

26–89

MD

91,938,198

101

44

87,970,542

26–89

  1. IF immature female; M Male; MD Male maintained in Darkness; MF mature female; ML Male maintained in Light conditions