From: The genomic architecture of mastitis resistance in dairy sheep
Trait | Lactation stage | SNP | aChr(position) | GAS | a | d | PVA | PVP | p | q |
---|---|---|---|---|---|---|---|---|---|---|
 |  |  |  | P-value | (P-value) | (P-value) |  |  |  |  |
SCC | early (weeks 1–7) | oar3_OAR19_27,830,713 | 19(27830713) | 5.54E-04 | −0.39(0.00) | −0.09(0.42) | 0.36 | 0.04 | 0.62 | 0.38 |
 |  | oar3_OAR19_27,397,476 | 19(27397476) | 7.74E-04 | −0.41(0.03) | 0.32(0.15) | 0.38 | 0.04 | 0.34 | 0.66 |
 |  | OAR19_29193780 | 19(27558690) | 8.00E-04 | 0.46(0.00) | 0.30(0.04) | 0.4 | 0.04 | 0.75 | 0.25 |
 |  | OAR19_29776311 | 19(28134366) | 1.28E-03 | 0.33(0.09) | 0.09(0.26) | 0.12 | 0.01 | 0.87 | 0.13 |
 | late (weeks 18–23) | oar3_OAR2_208,650,955 | 2(208650955) | 2.31E-05 | −0.24(0.07) | −0.52(0.00) | 0.19 | 0.01 | 0.71 | 0.29 |
 |  | oar3_OAR2_206,805,418 | 2(206805418) | 8.25E-05 | −0.27(0.00) | 0.45(0.13) | 0.07 | 0 | 0.99 | 0.01 |
 |  | OAR2_219641896 | 2(207420807) | 1.65E-04 | −0.14(0.46) | 0.22(0.25) | 0.01 | 0 | 0.83 | 0.17 |
 |  | OAR2_216496832 | 2(204569747) | 1.89E-04 | −0.22(0.04) | 0.01(0.91) | 0.11 | 0.01 | 0.38 | 0.62 |
 |  | oar3_OAR2_208,711,940 | 2(208711940) | 6.73E-04 | 0.11(0.41) | −0.68(0.00) | 0.18 | 0 | 0.19 | 0.81 |
 |  | oar3_OAR2_207,141,059 | 2(207141059) | 9.52E-04 | −0.14(0.00) | −0.84(0.00) | 0.14 | 0 | 0.96 | 0.04 |
 |  | oar3_OAR2_205,201,880 | 2(205201880) | 1.44E-03 | −0.28(0.01) | 0.03(0.79) | 0.08 | 0.01 | 0.64 | 0.36 |
 |  | oar3_OAR2_204,683,757 | 2(204683757) | 1.51E-03 | −0.20(0.04) | 0.09(0.42) | 0.04 | 0.01 | 0.49 | 0.51 |
 |  | oar3_OAR19_27,100,147 | 19(27100147) | 2.75E-05 | 0.52(0.02) | 0.63(0.00) | 0.39 | 0.03 | 0.85 | 0.15 |
 | overall (weeks 1–23) | OAR16_38842323 | 16(35633299) | 1.69E-03 | −0.18(0.01) | 0.12(0.13) | 0.04 | 0 | 0.8 | 0.2 |
 |  | oar3_OAR19_27,830,713 | 19(27830713) | 1.45E-03 | −0.21(0.01) | 0.15(0.16) | 0.09 | 0.01 | 0.62 | 0.38 |
CMT | early (weeks 1–7) | oar3_OAR19_27,397,476 | 19(27397476) | 3.67E-04 | −0.36(0.00) | 0.07(0.50) | 0.28 | 0.03 | 0.34 | 0.66 |
 |  | oar3_OAR19_27,100,147 | 19(27100147) | 3.93E-04 | 0.57(0.06) | 0.33(0.31) | 0.39 | 0.05 | 0.85 | 0.15 |
 |  | OAR19_29776311 | 19(28134366) | 4.78E-04 | 0.37(0.05) | 0.10(0.60) | 0.15 | 0.02 | 0.87 | 0.13 |
 |  | OAR19_29193780 | 19(27558690) | 9.22E-04 | 0.42(0.00) | 0.21(0.12) | 0.31 | 0.04 | 0.75 | 0.25 |
 |  | oar3_OAR19_27,723,161 | 19(27723161) | 1.18E-03 | 0.34(0.04) | 0.11(0.54) | 0.14 | 0.02 | 0.85 | 0.15 |
 | mid (weeks 8–17) | oar3_OAR19_27,830,713 | 19(27830713) | 4.31E-04 | −0.20(0.01) | 0.09(0.35) | 0.11 | 0.01 | 0.62 | 0.38 |
 |  | OAR19_27896777 | 19(26442150) | 6.20E-04 | 0.61(0.01) | 0.15(0.56) | 0.19 | 0.04 | 0.91 | 0.09 |
 |  | oar3_OAR19_27,264,253 | 19(27264253) | 9.35E-04 | 0.20(0.01) | −0.02(0.79) | 0.11 | 0.01 | 0.59 | 0.41 |
 | late (weeks 18–23) | oar3_OAR2_206,805,418 | 2(206805418) | 9.71E-04 | −0.19(0.00) | 0.29(0.28) | 0.03 | 0 | 0.99 | 0.01 |
 |  | oar3_OAR3_130,101,204 | 3(130101204) | 1.18E-03 | 0.12(0.00) | 0.14(0.15) | 0.01 | 0 | 0.9 | 0.1 |
 |  | OAR3_130,096,528.3SR | 3(130096528) | 1.32E-03 | 0.93(0.17) | 0.98(0.16) | 0.43 | 0.07 | 0.9 | 0.1 |
 |  | oar3_OAR16_35,319,166 | 16(35319166) | 4.60E-04 | −0.22(0.12) | 0.26(0.16) | 0.04 | 0.01 | 0.81 | 0.19 |
 |  | OAR16_37125504 | 16(34187287) | 1.21E-03 | −0.69(0.02) | −0.38(0.23) | 0.24 | 0.04 | 0.89 | 0.11 |
 |  | oar3_OAR19_27,100,147 | 19(27100147) | 1.79E-05 | 0.63(0.00) | 0.79(0.00) | 0.27 | 0.05 | 0.85 | 0.15 |
 |  | oar3_OAR19_26,711,220 | 19(26711220) | 7.13E-04 | 0.08(0.00) | −0.03(0.74) | 0.01 | 0 | 0.93 | 0.07 |
 |  | oar3_OAR19_27,830,713 | 19(27830713) | 1.16E-03 | −0.20(0.01) | 0.09(0.35) | 0.05 | 0.01 | 0.62 | 0.38 |
 |  | OAR16_37125504 | 16(34187287) | 1.21E-03 | −0.69(0.02) | −0.38(0.23) | 0.24 | 0.04 | 0.89 | 0.11 |
 | overall (weeks 1–23) | OAR16_37125504 | 16(34187287) | 1.08E-03 | −0.22(0.26) | 0.12(0.56) | 0.04 | 0.01 | 0.89 | 0.11 |
 |  | oar3_OAR19_27,100,147 | 19(27100147) | 1.09E-03 | 0.36(0.03) | 0.42(0.01) | 0.51 | 0.02 | 0.85 | 0.15 |
 |  | oar3_OAR19_27,830,713 | 19(27830713) | 1.16E-03 | −0.18(0.00) | 0.09(0.21) | 0.07 | 0.01 | 0.62 | 0.38 |
 |  | oar3_OAR19_27,830,713 | 19(27830713) | 8.81E-04 | −0.27(0.00) | 0.08(0.37) | 0.2 | 0.04 | 0.62 | 0.38 |
TVC | early (weeks 1–7) | OAR2_219801849 | 2(207575434) | 5.81E-09 | 0.27(0.00) | −0.23(0.03) | 0.33 | 0.02 | 0.25 | 0.75 |
 | late (weeks 18–23) | OAR2_219838408_X | 2(207609417) | 1.49E-08 | 0.22(0.03) | −0.17(0.11) | 0.22 | 0.02 | 0.26 | 0.74 |
 |  | OAR2_219641896 | 2(207420807) | 1.26E-06 | −0.15(0.27) | −0.08(0.59) | 0.07 | 0.01 | 0.83 | 0.17 |
 |  | oar3_OAR2_209,240,636 | 2(209240636) | 2.85E-06 | −0.19(0.51) | −0.32(0.09) | 0.05 | 0 | 0.93 | 0.07 |
 |  | oar3_OAR2_208,650,955 | 2(208650955) | 2.26E-05 | −0.12(0.18) | −0.32(0.00) | 0.07 | 0 | 0.71 | 0.29 |
 |  | oar3_OAR2_206,805,418 | 2(206805418) | 4.11E-04 | −0.15(0.00) | 0.28(0.19) | 0.03 | 0 | 0.99 | 0.01 |
 |  | OAR2_220844191 | 2(208597501) | 4.81E-04 | −0.10(0.22) | −0.16(0.10) | 0.05 | 0 | 0.69 | 0.31 |
 |  | oar3_OAR2_206,036,682 | 2(206036682) | 1.24E-03 | −0.49(0.00) | −0.50(0.00) | 0.12 | 0.01 | 0.84 | 0.16 |
 | overall (weeks 1–23) | OAR16_38842323 | 16(35633299) | 1.27E-03 | 0.05(0.00) | −0.01(0.84) | 0.06 | 0 | 0.8 | 0.2 |
 |  | OAR16_37125504 | 16(34187287) | 1.32E-03 | −0.30(0.01) | −0.13(0.29) | 0.15 | 0.01 | 0.89 | 0.11 |
 |  | OAR19_27896777 | 19(26442150) | 9.83E-04 | 0.16(0.16) | −0.03(0.79) | 0.07 | 0 | 0.91 | 0.09 |
CM |  | OAR16_39143709 | 16(35930429) | 6.98E-06 | −1.72(0.36) | 0.41(0.52) | 0.25 | 0.05 | 0.54 | 0.46 |
 | early (weeks 1–7) | OAR16_37226202 | 16(34279856) | 4.16E-04 | 2.04(0.02) | −0.80(0.39) | 0.28 | 0.05 | 0.51 | 0.49 |
 |  | s74559 | 16(35801129) | 4.41E-04 | 3.50(0.53) | 2.81(0.61) | 0.33 | 0.02 | 0.58 | 0.42 |
 |  | OAR16_37419505 | 16(34392335) | 1.21E-03 | −3.27(0.06) | 1.74(0.16) | 0.19 | 0.05 | 0.62 | 0.38 |
 |  | OAR16_37539041 | 16(34550197) | 1.76E-03 | 1.60(0.01) | −1.17(0.13) | 0.26 | 0.05 | 0.39 | 0.61 |
 |  | oar3_OAR19_28,110,151 | 19(28110151) | 6.23E-06 | 0.98(0.04) | 0.74(0.12) | 0.25 | 0.05 | 0.86 | 0.14 |
 |  | OAR19_29776311 | 19(28134366) | 5.92E-05 | 1.02(0.05) | 0.88(0.13) | 0.25 | 0.04 | 0.87 | 0.13 |
 |  | OAR19_29193780 | 19(27558690) | 4.95E-04 | 3.02(0.76) | 2.66(0.79) | 0.21 | 0.04 | 0.75 | 0.25 |
 |  | oar3_OAR19_27,018,360 | 19(27018360) | 8.26E-04 | −1.11(0.05) | 0.95(0.12) | 0.26 | 0.05 | 0.46 | 0.54 |
 |  | OAR5_104431404 | 5(95881956) | 1.18E-06 | 0.82(0.00) | 0.29(0.39) | 0.35 | 0.06 | 0.6 | 0.4 |
 | mid (weeks 8–17) | oar3_OAR5_96,114,753 | 5(96114753) | 8.66E-06 | 0.87(0.00) | 0.41(0.25) | 0.39 | 0.07 | 0.59 | 0.41 |
 |  | OAR5_104389335_X | 5(95841910) | 2.28E-05 | 1.02(0.02) | −1.01(0.06) | 0.27 | 0.09 | 0.64 | 0.36 |
 |  | oar3_OAR5_96,077,046 | 5(96077046) | 1.08E-04 | 0.59(0.03) | 0.89(0.05) | 0.12 | 0.03 | 0.41 | 0.59 |
 |  | oar3_OAR5_96,062,963 | 5(96062963) | 1.07E-03 | 0.44(0.07) | −0.22(0.14) | 0.12 | 0.02 | 0.43 | 0.57 |
 |  | OAR16_37226202 | 16(34279856) | 1.26E-03 | 2.02(0.02) | 1.27(0.03) | 0.21 | 0.04 | 0.51 | 0.49 |
 |  | OAR16_37539041 | 16(34550197) | 1.94E-03 | 1.60(0.01) | −1.17(0.13) | 0.26 | 0.05 | 0.39 | 0.61 |
 |  | oar3_OAR19_26,565,985 | 19(26565985) | 5.65E-04 | −0.70(0.04) | 0.32(0.48) | 0.25 | 0.05 | 0.52 | 0.48 |
 |  | oar3_OAR19_26808003 | 19(268,080,030 | 6.95E-04 | −0.58(0.05) | −0.07(0.97) | 0.14 | 0.02 | 0.74 | 0.26 |
 |  | OAR19_29482474 | 19(27864985) | 1.30E-03 | −3.49(0.86) | −3.33(0.87) | 0.23 | 0.04 | 0.1 | 0.9 |
 | late (weeks 18–23) | oar3_OAR5_96,114,753 | 5(96114753) | 1.81E-03 | 1.00(0.03) | 0.81(0.10) | 0.42 | 0.08 | 0.59 | 0.41 |
 |  | OAR5_104431404 | 5(95881956) | 2.89E-04 | 0.98(0.03) | 0.71(0.15) | 0.4 | 0.07 | 0.6 | 0.4 |
 |  | OAR5_104389335_X | 5(95841910) | 9.99E-04 | 0.47(0.04) | 0.66(0.17) | 0.21 | 0.02 | 0.64 | 0.36 |
 |  | oar3_OAR5_96,114,753 | 5(96114753) | 1.14E-03 | 0.62(0.01) | 0.32(0.25) | 0.24 | 0.04 | 0.59 | 0.41 |
 |  | OAR19_29776311 | 19(28134366) | 1.08E-03 | 1.08(0.00) | 1.07(0.01) | 0.28 | 0.05 | 0.87 | 0.13 |
 |  | oar3_OAR19_27,264,253 | 19(27264253) | 1.31E-03 | 1.00(0.03) | 0.23(0.64) | 0.42 | 0.08 | 0.59 | 0.41 |
 |  | oar3_OAR19_28,110,151 | 19(28110151) | 1.53E-04 | 0.98(0.05) | 0.74(0.21) | 0.25 | 0.05 | 0.86 | 0.14 |
 |  | oar3_OAR19_26,565,985 | 19(26565985) | 5.21E-04 | −0.42(0.06) | −0.06(0.82) | 0.1 | 0.02 | 0.52 | 0.48 |
 |  | OAR19_29193780 | 19(27558690) | 1.35E-03 | 0.56(0.10) | 0.08(0.82) | 0.15 | 0.02 | 0.75 | 0.25 |
 | overall (weeks 1–23) | oar3_OAR2_207,141,059 | 2(207141059) | 1.25E-03 | −0.24(0.00) | −1.95(0.01) | 0.1 | 0 | 0.96 | 0.04 |
 |  | oar3_OAR19_27,264,253 | 19(2726253) | 1.35E-03 | 0.88(0.00) | 0.11(0.71) | 0.36 | 0.07 | 0.59 | 0.41 |