Use of genotyping-by-sequencing to determine the genetic structure in the medicinal plant chamomile, and to identify flowering time and alpha-bisabolol associated SNP-loci by genome-wide association mapping

Otto, Lars-Gernot; Mondal, Prodyut; Brassac, Jonathan; Preiss, Susanne; Degenhardt, Jörg; He, Sang; Reif, Jochen Christoph; Sharbel, Timothy Francis

doi:10.1186/s12864-017-3991-0

Table 1 Origin name, genotype code, described geographical origin and source of the investigated plants

From: Use of genotyping-by-sequencing to determine the genetic structure in the medicinal plant chamomile, and to identify flowering time and alpha-bisabolol associated SNP-loci by genome-wide association mapping

Origin^a	Genotype code	Geographic origin	Geographic region^b	Source
Manzana1	002_02^c, 002_04^c	Germany	1	Pharmaplant GmbH
Bodegold	003_01^c, 003_02^c, 003_03^c, 003_04^c	Germany	1	Pharmasaat GmbH
Camoflora	004_01^c, 004_03^c, 004_04^c	Germany	1	Pharmaplant GmbH
Lutea	005_01^c, 005_02^c, 005_03^c, 005_04^c	Slovakia	2	Pharmaplant GmbH
Zloty Lan	006_01^c, 006_02, 006_03^c, 006_04^c	Poland	2	Pharmasaat GmbH
Goral	007_01^c, 007_02^c, 007_03^c, 007_04	Slovakia	2	Pharmasaat GmbH
Bohemia	008_02^c, 008_04^c, 008_05^c	Czech Republic	2	Semo
Promyk	009_01, 009_02^c, 009_03^c	Poland	2	Pharmaplant GmbH
Argenmilla	010_02^c, 010_03, 010_06^c	Argentina	5	Pharmaplant GmbH
trade B + T	011_01^c, 011_04^c, 011_05^c	France	1	B and T World Seeds
trade FStM	013_04, 013_06^cc	France	1	Ferme de Saint Marthe
trade PNOS	014_04^c, 014_05^c	Poland	2	PNOS Poland
trade Kiepenkerl	016_02^c, 016_04^c	Germany	1	Kiepenkerl, Bruno Nebelung GmbH
trade Italy 6	019_01^c, 019_03^c	Italy	4	Flortis
pop England 1	020_01, 020_04	England	1	Pharmaplant GmbH
trade Garafarm	021_02^c, 021_03^c, 021_05^c	Hungary	2	Garafarm
Margaritar	022_01^c, 022_02^c, 022_04^c, 022_06^c	Romania	3	Pharmaplant GmbH
trade Agbina	023_01^c, 023_02^c, 023_03^c	Russia	5	Agbina
Lazur	024_02^c, 024_03^c, 024_05^c, 024_07^c	Bulgaria	3	Pharmaplant GmbH
Germania	026_01^c, 026_02, 026_04^c, 026_05^c	Egypt	4	N.L. Chrestensen
trade USA	027_02^c, 027_03, 027_04^c	USA	5	Pharmaplant GmbH
pop Croatia	029_03^c, 029_04^c, 029_07^c	Kroatien	3	Pharmaplant GmbH
trade Italy 5	032_01^c, 032_04^c, 032_05^c	Italy	4	Flortis
trade Italy 4	033_03^c, 033_05^c	Italy	4	Plantania
pop Germany 1	064_01^c, 064_03^c	Germany	1	Genebank Gatersleben MAT 2
Pohorelicky Velkokvety	066_04^c, 066_07^c	Czech Republic	2	Genebank Gatersleben MAT 15
pop Bulgaria 1	067_02, 067_04	Bulgaria	3	Genebank Gatersleben MAT 16
Krajovy	515_01^c, 515_04	Slovakia	2	Genebank Gatersleben MAT 10
pop North Korea 1	516_01, 516_04, 516_07^c	North Korea	5	Genebank Gatersleben MAT 19
Bona	715_04^c, 715_06	Slovakia	2	Vet.med. University of Vienna
Manzana2	717_03^c, 717_04^c	Austria	1	Vet.med. University of Vienna
pop England 2	721_03^c, 721_04^c	England	1	coll. R. Pickering
pop England 3	722_03^c, 722_04^c	England	1	coll. R. Pickering
M. discoidea 1	701_01^c	Germany	1	Loki-Schmidt Genbank Osnabrück, Inv.-Nr:09–00-0145
M. discoidea 2	MD1_04^c, MD1_05^c, MD1_06^c	Germany	1	Loki-Schmidt Genbank Osnabrück, Inv.-Nr:04–00-0280

^aOrigins (variety, accession, wild and cultivated population) are named, if applicable, with the same or consecutive numbers as in Otto et al. [19] (e.g. trade Italy 6)
^bBased upon the climate from each origin, plants were classified into 5 geographic groups (according to Kottek et al. [76]): (1) middle-west Europe (2) middle-east Europe: (3) south-east Europe: (4) Mediterranean (5) remainder: USA, Argentina, Russia, North-Korea
^cAnalysis of chemical compounds was performed

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com

BMC Genomics

Contact us