Fig. 1
From: Evaluation and comparison of computational tools for RNA-seq isoform quantification
Workflow for transcript isoform quantification. Sequencing reads were either mapped by STAR aligner or directly fed into alignment-free methods, Salmon, Sailfish or Kallisto. The transcriptome BAM files were quantified by Salmon_aln, eXpress, RSEM or TIGAR2. The genome BAM files were quantified by Cuffquant and then Cuffnorm from the Cufflinks package. The results are summarized into counts and TPM tables for comparison