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Fig. 3 | BMC Genomics

Fig. 3

From: Evaluation and comparison of computational tools for RNA-seq isoform quantification

Fig. 3

Inconsistency in effective length calculation among methods for short transcripts. a Read counts were estimated correctly for the transcript SNHG25–002. b Methods showed disagreement in estimating TPM values for the same transcript. c The relationship between the effective transcript length estimated by each method and the corresponding transcript length. Only transcripts with length less than 400 nt are shown. Note the transcript length at x-axis is the total number of nucleotides of the transcript in the Gencode Release v25

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