Skip to main content

Table 3 Summary table of selected significantly differentially expressed genes from in vivo experiment comparing the WT to the T6SS double mutant

From: Role of the type VI secretion systems during disease interactions of Erwinia amylovora with its plant host

Name

Description

Fold change

Locus tag

p value

Chemotaxis and motility

  cheZ1

Protein phosphatase CheZ

−1.58185

EAMY_2086

4.64E-04

  cheY1

Response regulator

−1.83835

EAMY_2087

3.44E-06

  cheB1

  cheR1

Chemotaxis response regulator protein-glutamate methylesterase

Chemotaxis protein-glutamate O-methyltransferase

−1.54751

EAMY_2088

EAMY_2089

3.55E-06

  cheA1

Chemotaxis protein CheA

−1.56953

EAMY_2095

4.19E-04

  motB1

  motA1

Flagellar motor protein MotB

Flagellar motor protein MotA

−1.43199

EAMY_2096

EAMY_2097

9.34E-05

  tsr3

Methyl-accepting chemotaxis protein

−1.56906

EAMY_2093

5.40E-04

  tsr7

Methyl-accepting chemotaxis protein

−1.66575

EAMY_3131

7.23E-05

  fliC1

Flagellin

−2.30592

EAMY_2141

4.65E-13

Phosphate transport

  pstA3

  pstC3

Phosphate transporter permease subunit PtsA

Phosphate transporter permease subunit PstC

−2.37813

EAMY_3692

EAMY_3693

6.29E-05

  pstS3

Phosphate ABC transporter substrate-binding protein

−2.31073

EAMY_3694

2.01E-05

  pspA

Phage shock protein PspA

−1.73698

EAMY_1877

3.13E-05

Sulfur metabolism

  tauD3

  tauC

  tauB

Taurine dioxygenase

Taurine ABC transporter permease

Taurine ABC transporter ATP-binding protein

−2.15530

EAMY_3404

EAMY_3405

EAMY_3406

4.59E-07

  tauA

Taurine ABC transporter substrate-binding protein

−1.95397

EAMY_3407

3.30E-04

  cysJ

  cysI3

Sulfite reductase subunit alpha

Sulfite reductase subunit beta

−1.46844

EAMY_0747

EAMY_0748

4.80E-05

  cysN

  cysC

Sulfate adenylyltransferase

Adenylyl-sulfate kinase

−1.87812

EAMY_0754

EAMY_0755

2.92E-09

  1. Genes were considered as significantly differentially expressed, when their fold change was ≥1.4 or ≤ −1.4, respectively, and their p value <0.001