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Table 3 Upstream dinucleotide distribution

From: The discrepancy among single nucleotide variants detected by DNA and RNA high throughput sequencing data

Dinucleotide

DNA NB DNA NT

DNA NB DNA TP

DNA NT DNA TP

DNA NB RNA NT

DNA NB RNA TP

DNA NT RNA NT

DNA NT RNA TP

DNA TP RNA NT

DNA TP RNA TP

RNA NT RNA TP

CC

9.37%

9.45%

9.33%

10.05%

10.29%

9.84%

10.07%

10.00%

10.17%

10.33%

AA

5.57%

5.78%

5.37%

3.77%

3.65%

3.89%

3.82%

3.88%

3.73%

4.14%

CG

6.54%

7.71%

7.04%

10.51%

11.27%

10.11%

10.39%

10.16%

10.69%

9.03%

GC

6.97%

7.73%

7.14%

9.53%

10.06%

9.47%

9.78%

9.54%

10.17%

9.82%

TT

5.29%

4.60%

5.11%

3.41%

3.21%

3.57%

3.43%

3.47%

3.32%

3.99%

TA

4.87%

4.29%

5.00%

3.06%

2.97%

3.15%

3.08%

3.06%

2.99%

3.48%

AC

6.24%

7.32%

6.58%

7.52%

7.33%

7.49%

7.26%

7.69%

7.31%

8.11%

CA

5.25%

5.89%

5.37%

4.79%

5.30%

4.86%

5.29%

4.90%

5.36%

5.15%

TG

6.20%

5.25%

6.15%

5.54%

5.22%

5.72%

5.34%

5.52%

5.26%

5.02%

AT

3.14%

3.83%

3.22%

3.06%

3.03%

2.97%

2.98%

3.08%

3.04%

3.37%

TC

6.14%

6.83%

6.26%

6.57%

6.86%

6.44%

6.78%

6.47%

6.84%

7.10%

CT

4.21%

5.26%

4.34%

3.94%

4.43%

3.91%

4.34%

4.06%

4.48%

4.62%

GG

15.93%

10.01%

14.95%

13.14%

11.31%

13.42%

12.41%

12.94%

11.34%

10.51%

GA

5.20%

5.77%

5.12%

5.55%

5.43%

5.53%

5.44%

5.58%

5.56%

5.39%

AG

5.09%

5.62%

5.04%

5.34%

5.34%

5.42%

5.33%

5.41%

5.40%

5.23%

GT

4.00%

4.67%

3.97%

4.23%

4.31%

4.22%

4.27%

4.25%

4.36%

4.72%