DRREP: deep ridge regressed epitope predictor

BMC Genomics

Table 1 Accuracy and AUC results of applying DRREP to long protein sequence datasets, and the AUC results of other epitope predictors

DataSet	Tot Residues	Epitope%	System	75spec	AUC
SARS	193	63.3	DRREP	86.0	0.862
			BCPred	80.3	_
			ABCPred	67.9	0.648
			Epitopia	67.2	0.644
			CBTOPE	75.6	0.602
			LBtope	65.8	0.758
			DMN-LBE	59.1	0.561
HIV	2706	37.1	DRREP	61.4	0.683
			BepiPred	_	0.60
			ABCPred	61.2	0.55
			CBTOPE	60.4	0.506
			LBtope	61.2	0.627
			DMN-LBE	63.6	0.63
Pellequer	2541	37.6	DRREP	62.7	0.629
			LBtope	60.9	0.62
			DMN-LBE	62.8	0.61
AntiJen	66319	1.4	DRREP	73.0	0.702
			LBtope	74.2	0.702
			DMN-LBE	_	_
SEQ194	128180	6.6	DRREP	75.9	0.732
			Epitopia	_	0.59
			BEST10	_	0.57
			BEST16	_	0.57
			ABCPred	_	0.55
			CBTOPE	_	0.52
			COBEpro	_	0.55
			LBtope	75.3	0.71
			DMN-LBE	_	_

ISSN: 1471-2164