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Table 1 Accuracy and AUC results of applying DRREP to long protein sequence datasets, and the AUC results of other epitope predictors

From: DRREP: deep ridge regressed epitope predictor

DataSet Tot Residues Epitope% System 75spec AUC
SARS 193 63.3 DRREP 86.0 0.862
    BCPred 80.3 _
    ABCPred 67.9 0.648
    Epitopia 67.2 0.644
    CBTOPE 75.6 0.602
    LBtope 65.8 0.758
    DMN-LBE 59.1 0.561
HIV 2706 37.1 DRREP 61.4 0.683
    BepiPred _ 0.60
    ABCPred 61.2 0.55
    CBTOPE 60.4 0.506
    LBtope 61.2 0.627
    DMN-LBE 63.6 0.63
Pellequer 2541 37.6 DRREP 62.7 0.629
    LBtope 60.9 0.62
    DMN-LBE 62.8 0.61
AntiJen 66319 1.4 DRREP 73.0 0.702
    LBtope 74.2 0.702
    DMN-LBE _ _
SEQ194 128180 6.6 DRREP 75.9 0.732
    Epitopia _ 0.59
    BEST10 _ 0.57
    BEST16 _ 0.57
    ABCPred _ 0.55
    CBTOPE _ 0.52
    COBEpro _ 0.55
    LBtope 75.3 0.71
    DMN-LBE _ _