Table 1 AvBD SNPs. AvBD SNPs identified in commercial broiler chicken lines LX, LY and LZ using 12 K SNP panel array. Pooled genomic DNAs from 120 LX and LY birds, and up to 100 LZ birds were analysed for AvBD1 Exon 2 coding SNPs. SNP AvBD1a (A > G) at c.104, is defined as position of SNP where 1 is A of ATG start codon of AvBD1 cDNA sequence; Rs15457749 (A > C) at c.134 and Rs15457747 (C > T) at c.169. A > G represents nucleotide substitution in sense DNA strand. Data presented as mean frequency ± SEM
AvBD Gene | SNP Code | Location | LX | LY | LZ | |
|---|---|---|---|---|---|---|
Frequency | ||||||
1 | Rs15457749 | G/T | Exon 2 | 0.87 | 0.02 | 0.55 |
1 | Rs15457745 | C/T | Intron | 0.87 | 0.22 | 0.72 |
3 | SNPAvBD3a | C/T | Exon 1 | 0.87 | 0.23 | 0.89 |
4 | Rs16341536 | T/C | 5’UTR | 0.99 | 1 | 0.58 |
6 | Rs13526000 | T/G | Intron | 0.49 | 0 | 0.28 |
6 | Rs16341514 | G/T | Intron | 0.17 | 1 | 0.28 |
8 | Rs15457650 | G/T | Intron | 0.08 | 0 | 0.26 |
8 | Rs15457653 | T/C | Intron | 0.58 | 0.21 | 0.72 |
8 | SNPAvBD8a | C/T | Intron | 1 | 1 | 0.82 |
9 | Rs3137928 | T/C | 3’UTR | 0.08 | 0.14 | 0.61 |
9 | Rs14411786 | C/T | Intron | 0.97 | 0.86 | 0.65 |
9 | SNPAvBD9a | T/C | Intron | 0.99 | 0.86 | 0.36 |
10 | Rs15457607 | T/C | Intron | 0.88 | 0.98 | 0.45 |
10 | Rs14411785 | T/C | 5’UTR | 0.94 | 0.86 | 0.65 |
10 | SNPAvBD10a | T/C | Intron | 0.85 | 0.98 | 0.44 |