From: Genomic analysis of methanogenic archaea reveals a shift towards energy conservation
Organism | Mbac. bryantii | Msph. cuniculi | Msar. spelaei | Mcor. parvum |
---|---|---|---|---|
Number of reads | 7,552,398 | 6,883,020 | 9,312,063 | 4,790,894 |
Read length (bp) | 75 | 75 | 75 | 75 |
Coverage | 166 | 102 | 137 | 213 |
Total length (Mb) | 3.5 | 1.9 | 5.1 | 1.7 |
Largest scaffold (kb) | 1030 | 188 | 103 | 255 |
Number of scaffolds (>1000 bp) | 14 | 29 | 293 | 17 |
GC% | 33 | 28 | 39 | 51 |
N50 (kb) | 764 | 138 | 37 | 116 |
L50 | 2 | 6 | 48 | 5 |
Number of unique genes predicted | 3526 | 1658 | 5913 | 1844 |
Genes assigned to COGs | 2243 | 1139 | 2814 | 1322 |
Genes with signal peptides | 300 | 104 | 596 | 167 |
Genes assigned to transporter classification (TCDB) | 416 | 170 | 556 | 247 |
Genes encoding transmembrane helices | 934 | 331 | 1367 | 376 |
# predicted genes (n ≥ 0 bp) | 3526 | 1658 | 5913 | 1844 |
# predicted genes (n ≥ 300 bp) | 2831 | 1451 | 3584 | 1522 |
# predicted genes (n ≥ 1500 bp) | 335 | 228 | 500 | 203 |
# predicted genes (n ≥ 3000 bp) | 38 | 41 | 54 | 12 |
Total length (n ≥ 1000 bp) | 3,463,789 | 1,930,335 | 5,029,712 | 1,709,622 |