Skip to main content

Table 2 Genome Sequencing Statistics for Strains in this Study

From: Genomic analysis of methanogenic archaea reveals a shift towards energy conservation

Organism

Mbac. bryantii

Msph. cuniculi

Msar. spelaei

Mcor. parvum

Number of reads

7,552,398

6,883,020

9,312,063

4,790,894

Read length (bp)

75

75

75

75

Coverage

166

102

137

213

Total length (Mb)

3.5

1.9

5.1

1.7

Largest scaffold (kb)

1030

188

103

255

Number of scaffolds (>1000 bp)

14

29

293

17

GC%

33

28

39

51

N50 (kb)

764

138

37

116

L50

2

6

48

5

Number of unique genes predicted

3526

1658

5913

1844

Genes assigned to COGs

2243

1139

2814

1322

Genes with signal peptides

300

104

596

167

Genes assigned to transporter classification (TCDB)

416

170

556

247

Genes encoding transmembrane helices

934

331

1367

376

# predicted genes (n ≥ 0 bp)

3526

1658

5913

1844

# predicted genes (n ≥ 300 bp)

2831

1451

3584

1522

# predicted genes (n ≥ 1500 bp)

335

228

500

203

# predicted genes (n ≥ 3000 bp)

38

41

54

12

Total length (n ≥ 1000 bp)

3,463,789

1,930,335

5,029,712

1,709,622