Skip to main content

Table 2 Complete E. coli proteomes. The 166 E. coli complete proteomes from RefSeq (May 2016) that have been used in the study have been listed in this table

From: Bioinformatics comparisons of RNA-binding proteins of pathogenic and non-pathogenic Escherichia coli strains reveal novel virulence factors

Organism/Name

Strain

Assembly

Proteins

E. coli O157:H7 str. Sakai

Sakai substr. RIMD 0509952

GCA_000008865.1

5292

E. coli IAI39

IAI39

GCA_000026345.1

4725

E. coli str. K-12 substr. MG1655

K-12 substr. MG1655

GCA_000005845.2

4140

E. coli O83:H1 str. NRG 857C

NRG 857C

GCA_000183345.1

4582

E. coli O104:H4 str. 2011C-3493

2011C-3493

GCA_000299455.1

5149

E. coli CFT073

CFT073

GCA_000007445.1

4897

E. coli BL21(DE3)

BL21(DE3)

GCA_000009565.2

4302

E. coli str. K-12 substr. W3110

K-12 substr. W3110

GCA_000010245.1

4410

E. coli SE11

SE11

GCA_000010385.1

4968

E. coli SE15

SE15

GCA_000010485.1

4573

E. coli O103:H2 str. 12,009

12,009

GCA_000010745.1

5423

E. coli O111:H- str. 11,128

11,128

GCA_000010765.1

5673

E. coli UTI89

UTI89

GCA_000013265.1

4963

E. coli 536

536

GCA_000013305.1

4542

E. coli APEC O1

APEC O1

GCA_000014845.1

5292

E. coli O139:H28 str. E24377A

E24377A

GCA_000017745.1

5021

E. coli HS

HS

GCA_000017765.1

4366

E. coli B str. REL606

REL606

GCA_000017985.1

4344

E. coli ATCC 8739

ATCC 8739

GCA_000019385.1

4434

E. coli str. K-12 substr. DH10B

K-12 substr. DH10B

GCA_000019425.1

4450

E. coli SMS-3-5

SMS-3-5

GCA_000019645.1

4908

E. coli O157:H7 str. EC4115

EC4115

GCA_000021125.1

5631

E. coli O157:H7 str. TW14359

TW14359

GCA_000022225.1

5537

E. coli BW2952

K-12 substr. BW2952

GCA_000022345.1

4347

E. coli BL21(DE3)

BL21(DE3)

GCA_000022665.2

4302

E. coli DH1

DH1

GCA_000023365.1

4369

E. coli ‘BL21-Gold(DE3)pLysS AG’

BL21-Gold(DE3)pLysS AG

GCA_000023665.1

4322

E. coli O55:H7 str. CB9615

CB9615

GCA_000025165.1

5262

E. coli IHE3034

IHE3034

GCA_000025745.1

4911

E. coli 55,989

55,989

GCA_000026245.1

4953

E. coli IAI1

IAI1

GCA_000026265.1

4450

E. coli S88

S88

GCA_000026285.1

4696

E. coli O127:H6 str. E2348/69

E2348/69

GCA_000026545.1

4924

E. coli 042

42

GCA_000027125.1

5131

E. coli O26:H11 str. 11,368

11,368

GCA_000091005.1

5833

E. coli KO11FL

KO11

GCA_000147855.3

4850

E. coli ABU 83972

ABU 83972

GCA_000148365.1

4862

E. coli UM146

UM146

GCA_000148605.1

4779

E. coli W

W

GCA_000184185.1

4825

E. coli ETEC H10407

ETEC H10407

GCA_000210475.1

5124

E. coli UMNK88

UMNK88

GCA_000212715.2

5542

E. coli NA114

NA114

GCA_000214765.2

4720

E. coli PCN033

PCN033

GCA_000219515.3

4881

E. coli UMNF18

UMNF18

GCA_000220005.2

5521

E. coli O7:K1 str. CE10

CE10

GCA_000227625.1

5152

E. coli str. ‘clone D i2’

clone D i2

GCA_000233875.1

4740

E. coli str. ‘clone D i14’

clone D i14

GCA_000233895.1

4742

E. coli O55:H7 str. RM12579

RM12579

GCA_000245515.1

5213

E. coli P12b

P12b

GCA_000257275.1

4549

E. coli KO11FL

KO11FL

GCA_000258025.1

4732

E. coli W

W

GCA_000258145.1

4831

E. coli Xuzhou21

Xuzhou21

GCA_000262125.1

5402

E. coli str. K-12 substr. MG1655

K-12 substr. MG1655

GCA_000269645.2

4405

E. coli DH1

DH1

GCA_000270105.1

4351

E. coli str. K-12 substr. MG1655

K-12 substr. MG1655

GCA_000273425.1

4404

E. coli LF82

LF82

GCA_000284495.1

4544

E. coli O25b:H4-ST131

EC958

GCA_000285655.3

5037

E. coli O104:H4 str. 2009EL-2050

2009EL-2050

GCA_000299255.1

5283

E. coli O104:H4 str. 2009EL-2071

2009EL-2071

GCA_000299475.1

5227

E. coli APEC O78

APEC O78

GCA_000332755.1

4598

E. coli str. K-12 substr. MDS42

K-12 substr. MDS42

GCA_000350185.1

3713

E. coli LY180

LY180

GCA_000468515.1

4586

E. coli PMV-1

PMV-1

GCA_000493595.1

5100

E. coli JJ1886

JJ1886

GCA_000493755.1

5151

E. coli str. K-12 substr. MC4100

K-12 substr. MC4100

GCA_000499485.1

4284

E. coli O145:H28 str. RM13514

RM13514

GCA_000520035.1

5524

E. coli O145:H28 str. RM13516

RM13516

GCA_000520055.1

5354

E. coli

ST540

GCA_000597845.1

4498

E. coli

ST540

GCA_000599625.1

4532

E. coli

ST540

GCA_000599645.1

4550

E. coli

ST2747

GCA_000599665.1

4665

E. coli

ST2747

GCA_000599685.1

4585

E. coli

ST2747

GCA_000599705.1

4547

E. coli O145:H28 str. RM12761

RM12761

GCA_000662395.1

5349

E. coli O145:H28 str. RM12581

RM12581

GCA_000671295.1

5520

E. coli Nissle 1917

Nissle 1917

GCA_000714595.1

4990

E. coli KLY

KLY

GCA_000725305.1

4478

E. coli O157:H7 str. SS17

SS17

GCA_000730345.1

5532

E. coli O157:H7 str. EDL933

EDL933

GCA_000732965.1

5530

E. coli ATCC 25922

ATCC 25922

GCA_000743255.1

4940

E. coli BW25113

K-12 substr. BW25113

GCA_000750555.1

4398

E. coli

ECONIH1

GCA_000784925.1

5320

E. coli ER2796

ER2796

GCA_000800215.1

4311

E. coli K-12

ER3413

GCA_000800765.1

4309

E. coli RS218

RS218

GCA_000800845.2

4791

E. coli

RM9387

GCA_000801165.1

4775

E. coli

94–3024

GCA_000801185.2

4792

E. coli str. K-12 substr. MG1655

K-12 substr. MG1655

GCA_000801205.1

4387

E. coli O157:H7 str. SS52

SS52

GCA_000803705.1

5489

E. coli APEC IMT5155

APEC IMT5155

GCA_000813165.1

4840

E. coli

6409

GCA_000814145.2

4893

E. coli

 

GCA_000819645.1

4996

E. coli O157:H16

Santai

GCA_000827105.1

4776

E. coli 1303

1303

GCA_000829985.1

4849

E. coli

C41(DE3)

GCA_000830035.1

4302

E. coli ECC-1470

ECC-1470

GCA_000831565.1

4673

E. coli

BL21 (TaKaRa)

GCA_000833145.1

4262

E. coli

MNCRE44

GCA_000931565.1

5137

E. coli

K-12 substr. RV308

GCA_000952955.1

4342

E. coli

K-12 substr. HMS174

GCA_000953515.1

4344

E. coli

HUSEC2011

GCA_000967155.1

5294

E. coli VR50

VR50

GCA_000968515.1

4968

E. coli

CI5

GCA_000971615.1

4874

E. coli K-12

ER3454

GCA_000974405.1

4375

E. coli K-12

ER3440

GCA_000974465.1

4367

E. coli K-12

ER3476

GCA_000974505.1

4354

E. coli K-12

ER3445

GCA_000974535.1

4360

E. coli K-12

ER3466

GCA_000974575.1

4415

E. coli K-12

ER3446

GCA_000974825.1

4357

E. coli K-12

ER3475

GCA_000974865.1

4359

E. coli K-12

ER3435

GCA_000974885.1

4443

E. coli K-12

K-12 substr. AG100

GCA_000981485.1

4394

E. coli O104:H4 str. C227–11

C227–11

GCA_000986765.1

5269

E. coli

SEC470

GCA_000987875.1

4941

E. coli

SQ37

GCA_000988355.1

4405

E. coli

SQ88

GCA_000988385.1

4403

E. coli

SQ2203

GCA_000988465.1

4402

E. coli

CFSAN029787

GCA_001007915.1

5090

E. coli K-12

K-12 substr. GM4792

GCA_001020945.2

4362

E. coli K-12

K-12 substr. GM4792

GCA_001021005.2

4368

E. coli PCN061

PCN061

GCA_001029125.1

4680

E. coli

C43(DE3)

GCA_001039415.1

4254

E. coli

NCM3722

GCA_001043215.1

4530

E. coli ACN001

ACN001

GCA_001051135.1

4671

E. coli

DH1Ec095

GCA_001183645.1

4345

E. coli

DH1Ec104

GCA_001183665.1

4342

E. coli

DH1Ec169

GCA_001183685.1

4342

E. coli

RR1

GCA_001276585.1

4337

E. coli

SF-088

GCA_001280325.1

5019

E. coli

SF-468

GCA_001280345.1

5218

E. coli

SF-166

GCA_001280385.1

4773

E. coli

SF-173

GCA_001280405.1

4936

E. coli O157:H7

WS4202

GCA_001307215.1

5294

E. coli str. K-12 substr. MG1655

K-12 substr. MG1655

GCA_001308065.1

4398

E. coli

K-12 substr. MG1655_TMP32XR1

GCA_001308125.1

4398

E. coli

K-12 substr. MG1655_TMP32XR2

GCA_001308165.1

4399

E. coli

2012C-4227

GCA_001420935.1

5142

E. coli

2009C-3133

GCA_001420955.1

5311

E. coli

YD786

GCA_001442495.1

4604

E. coli

CQSW20

GCA_001455385.1

4142

E. coli

uk_P46212

GCA_001469815.1

5023

E. coli

ST648

GCA_001485455.1

4838

E. coli

CD306

GCA_001513615.1

5021

E. coli

JJ2434

GCA_001513635.1

5099

E. coli

ACN002

GCA_001515725.1

4618

E. coli

MRE600

GCA_001542675.2

4603

E. coli str. K-12 substr. MG1655

K-12 substr. MG1655

GCA_001544635.1

4407

E. coli

JEONG-1266

GCA_001558995.1

5358

E. coli B

C2566

GCA_001559615.1

4209

E. coli B

C3029

GCA_001559635.1

4317

E. coli K-12

DHB4

GCA_001559655.1

4522

E. coli K-12

C3026

GCA_001559675.1

4731

E. coli str. K-12 substr. MG1655

JW5437–1 substr. MG1655

GCA_001566335.1

4405

E. coli

SaT040

GCA_001566615.1

4963

E. coli

G749

GCA_001566635.1

4983

E. coli

ZH193

GCA_001566675.1

5040

E. coli

ZH063

GCA_001577325.1

4984

E. coli JJ1887

JJ1887

GCA_001593565.1

5142

E. coli str. Sanji

Sanji

GCA_001610755.1

5172

E. coli

28RC1

GCA_001612475.1

5504

E. coli

SRCC 1675

GCA_001612495.1

5511

E. coli

Ecol_732

GCA_001617565.1

5243

E. coli

Ecol_743

GCA_001618325.1

4866

E. coli

Ecol_745

GCA_001618345.1

4803

E. coli

Ecol_448

GCA_001618365.1

4956

E. coli B7A

B7A

GCA_000725265.1

5384