Table 3 Helianthus analyzed species and subspecies, their ploidy level and number of reads analyzed by RepeatExplorer
Species name | Section | Ploidy level | Reads used for the comparative analysis | Total reads processed by RepeatExplorer | Reads in clusters | Reads in singlets |
|---|---|---|---|---|---|---|
H. agrestis | Agrestis | 2× | 1000,000 | 259,362 | 218,464 (84.2%) | 40,898 (15.8%) |
H. annuus | Helianthus | 2× | 1000,000 | 260,544 | 196,995 (75.6%) | 63,549 (24.4%) |
H. petiolaris ssp. fallax | Helianthus | 2× | 1000,000 | 260,192 | 191,401 (73.6%) | 68,791 (26.4%) |
H. petiolaris ssp. petiolaris | Helianthus | 2× | 1000,000 | 259,278 | 198,005 (76.4%) | 61,273 (23.6%) |
H. porteri | Divaricati | 2× | 1000,000 | 260,872 | 207,361 (79.5%) | 53,511 (20.5%) |
H. divaricatus | Divaricati | 2× | 1000,000 | 259,756 | 200,072 (77.0%) | 59,684 (23.0%) |
H. giganteus | Divaricati | 2× | 1000,000 | 261,508 | 204,244 (78.1%) | 57,264 (21.9%) |
H. californicus | Divaricati | 4× | 2,000,000 | 520,754 | 386,259 (74.2%) | 134,495 (25.8%) |
H. hirsutus | Divaricati | 4× | 2,000,000 | 519,636 | 396,207 (76.2%) | 123,429 (23.8%) |
H. laevigatus | Divaricati | 4× | 2,000,000 | 521,176 | 406,256 (77.9%) | 114,920 (22.1%) |
H. tuberosus | Divaricati | 6× | 3,000,000 | 781,686 | 620,615 (79.4%) | 161,071 (20.6%) |