Table 4 Description of the 248 clusters obtained by hybrid clustering using RepeatExplorer and annotated as LTR-RE, and the percentage of analyzed reads per cluster
Superfamily | Lineage | Number of clusters | Reads in clusters [%] |
|---|---|---|---|
Copia | AleII | 4 | 0.84 |
Angela | 5 | 0.66 | |
Bianca | 1 | 0.13 | |
Maximus/SIRE | 32 | 6.46 | |
TAR/Tork | 7 | 0.51 | |
Unknown | 7 | 2.88 | |
Total | 56 | 11.48 | |
Gypsy | Athila | 25 | 3.18 |
Chromovirus | 105 | 35.29 | |
Ogre/Tat | 20 | 4.03 | |
Unknown | 14 | 3.15 | |
Total | 164 | 45.65 | |
Unknown | Â | 28 | 5.7 |