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Table 5 Genome proportion of LTR-RE sequences and maximum percentage of variation among the analyzed species and subspecies (acronyms as defined in Table 1)

From: Genome-wide analysis of LTR-retrotransposon diversity and its impact on the evolution of the genus Helianthus (L.)

Superfamily

Lineage

Genome proportion

Max. percentage of variation

  

ANN

PFA

PPE

DIV

HIR

TUB

GIG

CAL

LAE

POR

AGR

 

Copia

AleII

0.89

0.85

0.75

0.59

0.82

0.75

0.82

1.32

0.66

1.07

0.57

56.94

Angela

0.79

0.82

0.59

0.57

0.90

0.71

0.93

0.46

0.67

0.45

0.29

69.15

Bianca

0.19

0.21

0.11

0.14

0.18

0.12

0.17

0.07

0.11

0.11

0.03

85.60

Maximus/SIRE

6.72

7.08

7.21

4.31

6.11

6.04

6.40

4.41

4.90

15.56

7.08

72.32

TAR/Tork

0.41

0.49

0.58

0.59

0.48

0.52

0.47

0.32

0.62

0.63

0.62

48.22

Unknown

3.43

2.93

2.83

2.11

3.09

2.84

3.02

2.76

2.28

4.97

2.04

58.92

Total

12.44

12.39

12.08

8.31

11.58

10.98

11.81

9.34

9.23

22.79

10.62

63.53

Gypsy

Athila

2.81

3.00

3.88

3.29

2.64

3.29

2.51

2.87

3.65

4.07

3.19

38.47

Chromovirus

30.82

29.92

31.52

37.85

34.10

36.87

36.73

33.83

37.02

25.25

52.18

51.62

Ogre/Tat

5.96

3.98

4.64

3.76

4.85

5.22

4.42

2.83

3.93

1.78

1.02

82.85

Unknown

2.75

3.13

4.11

4.25

2.85

3.50

2.36

3.91

3.59

1.95

0.64

85.05

Total

42.34

40.04

44.14

49.15

44.44

48.88

46.02

43.44

48.18

33.05

57.03

42.04

LTR-RE unclassified

6.00

5.93

5.51

5.40

5.40

5.31

5.66

5.97

5.49

5.98

7.34

27.59

Annotated LTR-RE total

60.77

58.36

61.73

62.86

61.42

65.18

63.49

58.75

62.90

61.83

74.99

22.17

LTR-Gypsy/LTR-Copia

3.40

3.23

3.66

5.91

3.84

4.45

3.90

4.65

5.22

1.45

5.37

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