Superfamily | Lineage | Genome proportion | Max. percentage of variation | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  | ANN | PFA | PPE | DIV | HIR | TUB | GIG | CAL | LAE | POR | AGR |  |
Copia | AleII | 0.89 | 0.85 | 0.75 | 0.59 | 0.82 | 0.75 | 0.82 | 1.32 | 0.66 | 1.07 | 0.57 | 56.94 |
Angela | 0.79 | 0.82 | 0.59 | 0.57 | 0.90 | 0.71 | 0.93 | 0.46 | 0.67 | 0.45 | 0.29 | 69.15 | |
Bianca | 0.19 | 0.21 | 0.11 | 0.14 | 0.18 | 0.12 | 0.17 | 0.07 | 0.11 | 0.11 | 0.03 | 85.60 | |
Maximus/SIRE | 6.72 | 7.08 | 7.21 | 4.31 | 6.11 | 6.04 | 6.40 | 4.41 | 4.90 | 15.56 | 7.08 | 72.32 | |
TAR/Tork | 0.41 | 0.49 | 0.58 | 0.59 | 0.48 | 0.52 | 0.47 | 0.32 | 0.62 | 0.63 | 0.62 | 48.22 | |
Unknown | 3.43 | 2.93 | 2.83 | 2.11 | 3.09 | 2.84 | 3.02 | 2.76 | 2.28 | 4.97 | 2.04 | 58.92 | |
Total | 12.44 | 12.39 | 12.08 | 8.31 | 11.58 | 10.98 | 11.81 | 9.34 | 9.23 | 22.79 | 10.62 | 63.53 | |
Gypsy | Athila | 2.81 | 3.00 | 3.88 | 3.29 | 2.64 | 3.29 | 2.51 | 2.87 | 3.65 | 4.07 | 3.19 | 38.47 |
Chromovirus | 30.82 | 29.92 | 31.52 | 37.85 | 34.10 | 36.87 | 36.73 | 33.83 | 37.02 | 25.25 | 52.18 | 51.62 | |
Ogre/Tat | 5.96 | 3.98 | 4.64 | 3.76 | 4.85 | 5.22 | 4.42 | 2.83 | 3.93 | 1.78 | 1.02 | 82.85 | |
Unknown | 2.75 | 3.13 | 4.11 | 4.25 | 2.85 | 3.50 | 2.36 | 3.91 | 3.59 | 1.95 | 0.64 | 85.05 | |
Total | 42.34 | 40.04 | 44.14 | 49.15 | 44.44 | 48.88 | 46.02 | 43.44 | 48.18 | 33.05 | 57.03 | 42.04 | |
LTR-RE unclassified | 6.00 | 5.93 | 5.51 | 5.40 | 5.40 | 5.31 | 5.66 | 5.97 | 5.49 | 5.98 | 7.34 | 27.59 | |
Annotated LTR-RE total | 60.77 | 58.36 | 61.73 | 62.86 | 61.42 | 65.18 | 63.49 | 58.75 | 62.90 | 61.83 | 74.99 | 22.17 | |
LTR-Gypsy/LTR-Copia | 3.40 | 3.23 | 3.66 | 5.91 | 3.84 | 4.45 | 3.90 | 4.65 | 5.22 | 1.45 | 5.37 | Â |