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Table 1 Summary of small RNA sequencing and annotation in LASP and LPSP

From: Genome-wide identification of leaf abscission associated microRNAs in sugarcane (Saccharum officinarum L.)

 

Q1

Q2

T1

T2

B1

B2

Total reads

12,265,513

12,244,515

11,581,880

11,470,897

12,089,516

11,927,094

Clean reads

11,932,261

11,966,866

11,323,908

11,243,443

11,841,904

11,774,071

Mapping to the reference

6,289,451

4,794,303

4,752,371

5,508,483

5,463,043

4,142,894

sRNA reads mapping to miRNAs

1,323,246

992,446

1,171,729

1,404,371

1,895,595

594,461

Known miRNA

81

85

84

85

84

69

Novel miRNA

259

272

265

263

284

244

rRNA, tRNA, snRNA, snoRNA, etc.

1,304,588

695,355

723,361

1,027,076

711,685

601,042

unannotated sRNA reads

9,304,427

10,279,133

9,428,818

8,811,996

9,234,624

10,578,568

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BMC Genomics

ISSN: 1471-2164

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