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Table 2 Differentially expressed miRNAs between LASP and LPSP

From: Genome-wide identification of leaf abscission associated microRNAs in sugarcane (Saccharum officinarum L.)

miRNA LPSPa LASPa Log2FCb p-valuec FDRd
B1 B2 Q2 Q1 T1 T2
sof-miRN167-3p 0 0 0 14.331 0.177 0 8.451 5.50E-17 5.01E-15
sof-miR167b-5p 23.223 0.595 11.448 807.81 63.317 135.635 4.471 6.69E-25 1.83E-22
sof-miR167c-5p 24.996 1.444 9.526 822.728 64.377 130.387 4.433 1.50E-24 2.15E-22
sof-miR167a-5p 24.996 1.444 9.526 821.722 64.2 129.853 4.430 1.57E-24 2.15E-22
sof-miR408-3p 0.422 0.17 0.836 18.186 5.387 11.562 4.126 2.64E-16 2.06E-14
sof-miR167b-3p 2.027 0.085 1.421 21.79 6.535 43.759 4.042 5.59E-19 6.12E-17
sof-miR167a-3p 3.378 1.019 0.251 30.673 6.358 28.372 3.355 4.40E-14 2.19E-12
sof-miR156-5p 34.454 15.712 60.25 1288.775 76.917 230.445 3.317 5.85E-16 4.00E-14
sof-miR396b-5p 654.118 30.491 108.299 6328.725 927.242 1603.601 3.166 6.63E-15 4.01E-13
sof-miR396a-5p 655.3 30.491 108.968 6310.874 927.153 1603.868 3.160 7.32E-15 4.01E-13
sof-miR396c-3p 3.124 0 1.17 25.812 4.857 6.848 2.721 2.06E-10 8.68E-09
sof-miRN375-3p 3.124 0 1.17 25.812 4.857 6.848 2.721 2.06E-10 8.68E-09
sof-miR395c-5p 1.942 0.934 1.671 5.615 9.184 12.541 2.178 6.80E-07 1.62E-05
sof-miR395a-3p 1.942 1.104 1.671 5.615 9.184 12.541 2.106 1.68E-06 3.84E-05
sof-miR395b-5p 1.942 1.104 1.671 5.447 8.036 12.541 2.036 3.71E-06 7.51E-05
sof-miR156-3p 0.338 0.51 0.585 5.783 1.06 0.889 1.816 0.001132 0.009671
sof-miRN145-3p 1.351 0.595 0.084 0.084 9.449 0.089 1.807 0.000279 0.003154
sof-miRN267-5p 2.364 0 0.752 7.878 2.561 3.38 1.765 4.95E-05 0.000714
sof-miR5384-3p 1.52 0 0.836 9.638 0 1.067 1.693 0.000205 0.002547
sof-miRN054-3p 19 14.014 8.022 115.904 19.516 63.771 1.634 3.06E-05 0.000507
sof-miR171c-3p 25.165 0.679 2.507 80.119 6.8 8.005 1.378 0.000357 0.003909
sof-miR166d-5p 4.222 1.274 3.51 20.533 3.797 7.649 1.352 0.001059 0.009198
sof-miR393-3p 9.289 3.142 5.933 30.17 10.509 21.079 1.306 0.001004 0.009006
sof-miR393-5p 45.516 11.975 24.651 150.433 31.261 83.426 1.261 0.000992 0.009006
sof-miRN014-3p 0 0.425 3.844 6.788 6.711 0.356 1.219 0.006096 0.040176
sof-miRN164-5p 14.187 7.134 8.189 0 5.652 9.872 −1.307 0.001391 0.011189
sof-miRN060-3p 8.445 9.682 8.858 5.531 4.592 4.091 −1.543 0.000147 0.001867
sof-miRN141-3p 33.272 1.529 18.551 0 0 18.411 −1.631 5.92E-05 0.00083
sof-miRN097-5p 45.094 23.866 23.147 24.639 7.948 10.05 −1.678 1.79E-05 0.000326
sof-miR166e-5p 31.583 5.606 17.465 1.257 7.241 10.94 −1.728 1.86E-05 0.000328
sof-miRN003-5p 5.236 0.085 0.501 0.251 0.177 1.512 −1.814 0.001153 0.009704
sof-miRN377-5p 1.013 10.277 0.836 1.341 2.384 1.779 −2.094 1.86E-06 4.08E-05
sof-miR166g-5p 56.325 17.241 59.498 2.179 9.537 25.437 −2.103 1.23E-07 3.53E-06
sof-miR159-5p 7.6 14.863 24.651 10.392 0.442 6.226 −2.106 1.93E-07 5.02E-06
sof-miRN207-5p 7.093 15.797 15.961 5.28 3.444 3.113 −2.406 6.38E-09 2.33E-07
sof-miRN245-5p 0.084 7.134 1.086 0.503 0.883 1.334 −2.529 1.64E-07 4.50E-06
sof-miRN303-5p 1.013 11.975 0.084 0.587 2.384 1.512 −2.534 2.08E-08 7.10E-07
sof-miR319-3p 404.58 1660.938 5.766 163.842 1.325 1.512 −4.864 1.95E-28 1.07E-25
  1. aNormalized miRNA expression, > 5 in one of the six samples
  2. bLog 2 fold change, > 1 or <− 1
  3. cP-value calculated by edgeR, < 0.05
  4. dFalse discovery rate, < 0.05
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BMC Genomics

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