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Fig. 2 | BMC Genomics

Fig. 2

From: Genomic, transcriptomic, and proteomic approaches towards understanding the molecular mechanisms of salt tolerance in Frankia strains isolated from Casuarina trees

Fig. 2

Genomic taxonomy of Frankia strains isolated from Casuarina spps. a Concatenated phylogenetic affiliation of 394 maximum-parsimony trees for amino acid sequences of orthologs among all of the genomes including Casuarina isolates, F. alni strain ACN14a isolated from Alnus and Acidothermus celloluyticus, which was used as an outgroup. The numbers on the branches represent the percent confidence of speciation of a given branch. b AAI, ANI, and genome to genome distance (multiplied by 1000) values for the different Casuarina isolates and F. alni strain ACN14a isolated from Alnus which is included for comparison. Genome to genome distance was determined by GGDC as a function of sum of all identities found in HSPs divided by overall HSP length. GGDC2 BLAST+ was used as the alignment method for finding intergenomic matches

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BMC Genomics

ISSN: 1471-2164

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