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Fig. 4 | BMC Genomics

Fig. 4

From: Genomic, transcriptomic, and proteomic approaches towards understanding the molecular mechanisms of salt tolerance in Frankia strains isolated from Casuarina trees

Fig. 4

Pangenome analysis of single-copy genes (a) Shared and specific single-copy orthologous CDSs among the highly salt-tolerant (Allo2 and CcI6), the moderately salt-tolerant (CeD), and the salt sensitive (CcI3) strains. b Distribution of the 153 single-copy genes specific to the two highly salt-tolerant strains into functional COG categories: C, energy production and conversion; D, cell division and chromosome partitioning; E, amino acid transport and metabolism; F, nucleotide transport and metabolism; G, carbohydrate transport and metabolism; H, coenzyme metabolism; I, lipid transport and metabolism; J, translation, ribosomal structure and biogenesis; K, transcription; L, DNA replication, recombination and repair; M, cell wall/membrane biogenesis; O, posttranslational modification, protein turnover, chaperones; P, inorganic ion transport and metabolism; Q, secondary metabolite biosynthesis, transport and catabolism; R, general function prediction only; S, function unknown; T, signal transduction mechanisms; U, intracellular trafficking and secretion; and V, defense mechanisms. Proteins that could be classified to more than one category are represented by two letters

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