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Table 3 Predictions of ToxT regulated sRNAs in Vibrio cholerae

From: Prediction of bacterial small RNAs in the RsmA (CsrA) and ToxT pathways: a machine learning approach

Organism

Flanking genes

Orientation

Predicted 5 end

Predicted 3 end

Probability

Vibrio cholerae

VC_0312/VC_0313

→←→

323707

323584

0.97

Vibrio cholerae

VC0967

antisense

1031946

1032143

0.97

Vibrio cholerae

VC_1192/VC_1193

→→←

1266285

1266383

0.94

Vibrio cholerae

VC_0249

antisense

255195

255110

0.94

Vibrio cholerae

VC_0994/VC_0995

←←→

1061082

1060968

0.98

Vibrio cholerae

VC_1072/VC_1073

→→→

1139343

1139442

0.94

  1. Arrows indicate the orientations of the predicted sRNA (center) and the two flanking genes