Source data set | Identifier | Assembled sequence length (aa) | Average measured MIC (mg/L) | Most similar plasmid-mediated qnr | Identity with most similar pm-qnr (%) | Best match in Genbank (% identity) | Comment |
---|---|---|---|---|---|---|---|
Human microbiomes [43] | HMP 1 | 206 | - | QnrB10 and QnrB62 | 97.04 | AFY16910.1(98%) | Possible misassembly: Stop codon in position 30 |
WWTP [54] | WWTP 1 | 207 | - | QnrB15 | 61.76 | WP_056930987.1(94%) | Â |
WWTP [54] | WWTP 2 | 220 | - | QnrA3 | 47.93 | WP_025325370.1(95%) | 10 aa difference to chromosomal variant |
WWTP [54] | WWTP 3a | 220 | - | QnrA3 | 47.93 | WP_005328535.1(100%) | Identical to sequence in Genbank |
WWTP [54] | WWTP 4a | 219 | - | QnrA3 | 46.76 | WP_041212172.1(100%) | Identical to sequence in Genbank |
Antibiotic-polluted Indian lake [55] | Lake 1a | 220 | - | QnrVC4 | 99.54 | WP_000361703.1(100%) | Identical to sequence in Genbank |
Antibiotic-polluted Indian river sediment [56] | APRS 1a | 220 | - | QnrVC4 | 99.54 | WP_000361703.1(100%) | Identical to sequence in Genbank; Lake 1 |
Antibiotic-polluted Indian river sediment [56] | APRS 2 | 207 | - | QnrA3 | 47.06 | WP_041212172.1(99%) | Missing start codon |
Indian well water [35] | Well 1a | 220 | - | QnrVC4 | 99.54 | WP_000361703.1(100%) | Identical to sequence in Genbank |
Oil spill [57] | Oilspill 1 | 220 | 0.037 | QnrVC1 | 65.44 | WP_019613380.1 (82%) | Â |
Oil spill [57] | Oilspill 2 | 220 | 0.025 | QnrVC1 | 64.98 | WP_019613380.1 (80%) | |
Oil spill [57] | Oilspill 3 | 220 | 0.034 | QnrVC1 | 62.21 | WP_057181431.1(77%) | |
Pune river sediments [58] | Pune 1 | 217 | - | QnrB27 | 62.15 | WP_056930987.1(95%) | |
Pune river sediments [58] | Pune 2 | 219 | - | QnrA3 | 47.69 | WP_005340643.1(99%) | 1 aa difference to chromosomal variant |
Pune river sediments [58] | Pune 3 | 220 | - | QnrA3 | 49.77 | WP_044798915.1(99%) | 3 aa difference to AhQnr |
Pune river sediments [58] | Pune 4a | 219 | - | QnrA3 | 46.76 | WP_042864588.1(100%) | Identical to sequence in Genbank |
Wadden sea [59] | Wadden 1 | 220 | 0.16 | QnrVC5 | 73.73 | WP_036748004.1(76%) | Â |
Wadden sea [59] | Wadden 2 | 220 | - | QnrVC6 | 73.73 | WP_007624600.1(75%) | |
Wadden sea [59] | Wadden 3 | 219 | 0.029 | QnrA6 | 62.96 | WP_009385382.1(77%) | |
Wadden sea [59] | Wadden 4 | 219 | 0.014 | QnrVC7 | 66.67 | WP_009385382.1(76%) | |
Wadden sea [59] | Wadden 5 | 220 | 0.073 | QnrA3 | 57.14 | WP_006228785.1(66%) | |
Tara oceans [60] | Tara 1a | 219 | - | QnrVC1 | 60.65 | WP_005374358.1(100%) | Identical to sequence in Genbank |
Tara oceans [60] | Tara 2 | 222 | 0.045 | QnrA3 | 52.29 | WP_045976340.1(60%) | Â |
Tara oceans [60] | Tara 3 | 220 | 0.032 | QnrVC5 | 53.46 | WP_012534242.1(58%) | Â |
Tara oceans [60] | Tara 4 | 223 | - | QnrS2 | 32.57 | BAH90541.1(49%) | Â |
Tara oceans [60] | Tara 5 | 220 | - | QnrA2 | 32.72 | EPJ45142.1(38%) | Â |
Tara oceans [60] | Tara 6 | 221 | - | QnrA3 | 31.19 | EPJ45142.1(37%) | Â |