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Table 3 Number of tokens involved in the code of the different approaches on the 14 example queries

From: START: a system for flexible analysis of hundreds of genomic signal tracks in few lines of SQL-like queries

Query

START

Bedtools

Python

SQ1

21

63

158

SQ2

30

71

220

SQ3

6

26

202

SQ4

34

61

336

SQ5

23

28

162

SQ6

12

24

146

SQ7

13

25

117

SQ8

14

25

91

CQ1

38

N/A

288

CQ2

53

N/A

460

CQ3

102

N/A

471

CQ4

105

164

500

CQ5

266

N/A

462

CQ6

50

83

202

  1. N/A indicates cases in which we were unable to find a trivial way to perform the analysis using the approach
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BMC Genomics

ISSN: 1471-2164

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