Query | Number of input tracks | Number of input intervals | Number of output intervals | START | Bedtools | Python | Galaxy |
---|---|---|---|---|---|---|---|
SQ1 | 1 | 57,059,743 | 23,857,046 | 207 | 407 | 1171 | N/A |
SQ2 | 2 | 11,517,945 | 33,312 | 50 | 135 | 184 | N/A |
SQ3 | 2 | 51,417 | 14,026 | 39 | 0.04 | 0.3 | 23 |
SQ4 | 2 | 11,517,945 | 1,054,854 | 47 | 21 | 42 | 408 |
SQ5 | 1 | 8,898,501 | 450,380 | 52 | 7 | 125 | 270 |
SQ6 | 2 | 18,839 | 5702 | 46 | 0.04 | 21 | N/A |
SQ7 | 1 | 2,619,444 | 36,366 | 31 | 6 | 5 | 44 |
SQ8 | 1 | 2,619,444 | 1 | 33 | 2 | 3 | 30 |
CQ1 | 52 | 1,514,863 | 2,590,502 | 86 | N/A | 36 | N/A |
CQ2 | 3 | 2,938,174 | 29,225 | 300 | N/A | 7 | N/A |
CQ3 | 53 | 4,134,307 | 76,041 | 1340 | N/A | 84 | N/A |
CQ4 | 100 | 32,297,907 | 68,031 | 1680 | 262 | 420 | N/A |
CQ5 | 5 | 257,369,824 | 264 | 360 | N/A | 5289 | N/A |
CQ6 | 2 | 65,412,859 | 4,006,220 | 119 | 207 | 483 | N/A |