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Table 2 Number of informative SNPs located on the 26 chromosomes of the cotton AD genome

From: Regional association analysis-based fine mapping of three clustered QTL for verticillium wilt resistance in cotton (G. hirsutum. L)

Chr.a

SNPnumberb

UniqueSNPsc

At_chr1

3506

326

At_chr2

2888

249

At_chr3

3163

144

At_chr4

3757

473

At_chr5

3439

229

At_chr6

2834

186

At_chr7

1410

77

At_chr8

3066

185

At_chr9

3597

322

At_chr10

3267

215

At_chr11

3507

229

At_chr12

2897

135

At_chr13

3492

300

Dt_chr1

4484

683

Dt_chr2

2651

318

Dt_chr3

2112

185

Dt_chr4

2350

238

Dt_chr5

2987

516

Dt_chr6

2379

244

Dt_chr7

2321

111

Dt_chr8

2628

363

Dt_chr9

3435

404

Dt_chr10

2623

265

Dt_chr11

2748

222

Dt_chr12

1987

126

Dt_chr13

2868

300

  1. aThe chromosome names were based on the TM-1(Gossypium hirsutum L.) genome sequencing version BGI_Gossypium_hirsutum_v1.0: https://www.cottongen.org/species/Gossypium_hirsutum/bgi-AD1_genome_v1.0
  2. bThe informative SNPs were numbered on the basis of the SNPS with an e-value threshold of less than e-18 in a BlastN search against the cotton AD genome
  3. cUnique SNPs were regarded as those with only one hit against the genome in Blast