Analysis of the genome sequence of Phomopsis longicolla: a fungal pathogen causing Phomopsis seed decay in soybean

Table 5 Classification of repetitive elements identified in the genome of Phomopsis longicolla isolate MS 10–6

	Total length (bp)	Repetitive content (%)	Genome content (%)
Class I (Retrotransposon)
LTR retrotransposon^a
LTR/Copia	2,408,959	30.71	3.89
LTR/Gypsy	1,914,239	24.40	3.09
LTR/Other	80,954	1.03	0.13
Subtotal	4,404,152	56.14	7.11
Non-LTR retrotransposon
LINE^b	74,280	0.95	0.12
Total Class I	4,478,432	57.09	7.23
Class II (DNA transoposon)
DNA/TcMar	3,277,211	41.77	5.29
DNA/Other	65,709	0.84	0.11
Total Class II	3,342,920	42.61	5.4
Other
Satellites, rRNA, Unknown repeats	23,808	0.30	0.04
Total	7,845,160		12.67

ISSN: 1471-2164