Skip to main content

Table 4 Primers used for qRT-PCR validation

From: Comparative transcriptome analysis of cotton fiber development of Upland cotton (Gossypium hirsutum) and Chromosome Segment Substitution Lines from G. hirsutum × G. barbadense

Gene ID

Gene name

Forward 5′-3′

Reverse 5′-3′

XLOC_075251

Remorin family

GCGGAGGAAACGAAGAAGGA

TCAGGGGCTTTCTCAACGAC

XLOC_073805

SBE2.1

TTGATTCTGCCCTCCGACAG

GTTGGAACCATCCCATCCGT

XLOC_073501

LTP6

CTCTACGGCGAGGTTCAGAC

GCACCTTGTTGCAGTCAGTG

XLOC_070258

germin 3

ACTTGAATGGCCCTGTAGGC

TAACACCCGGGAATTGAGCC

XLOC_066119

C3HC4-type finger family

GAACCCTCTTGTCCCTGTCG

GCAGTGCCAACCATAAGAGC

XLOC_065464

HSP20

GGCAATCGTAGGGGTAGCAG

CTTTCTTGAGGCCAGGGAGG

XLOC_059302

BXL1

CTCAAGTCATCACCACCGCT

CGTAGTTGGCGGCGTATTTG

XLOC_055404

FKBP

AGTTGGTGAAGAAAAAGAGATTG

GATACCCTCATCCCAGCCCT

XLOC_055253

EAP family

CACACCGACTACAAAGCCCT

CTCTCCACTCCCTTGGCTTG

XLOC_053137

CesA4

TCAAAGGGTCCGCTCCAATC

GGCGAGTAAAGGGATCGAGG

XLOC_051736

FLA7

ACGATACTATGCCCTTGCGG

GACTGGCTTGGACGTGTGTA

XLOC_043243

DFRA

TTATGTCGTCCGAGCCACTG

CGGACTCGAAGTCCATAGGC

XLOC_038889

PL family

GCCAGCGTTCATATTGCAGG

TGGTCAACCCAAACATGGCT

XLOC_029431

ABP1

GCCGATCCATAGGCACTCTT

GCAGTGTGAGGCATCAACCA

XLOC_014066

alpha/beta-Hydrolases superfamily

AGGAGCAGTGTTGTTGCTGA

TGAGGCAATTTGCAGCCAGTA

XLOC_011853

PDF1

CGATTTCTGGAGGAGTCACCC

GCCCCAAGTCCATCAGTACG

XLOC_010754

NAD(P)-binding Rossmann-fold superfamily

GACGTTGGCTGAAAAGGCAG

CAGAAAAACATGGGCTCGGC

XLOC_008560

KCS12

ACTGGAATGGGGTGTAGTGC

CACCCGAACGGAACAAACAA

XLOC_006314

GATA-type zinc finger family

ATGCATGGCCTGTGACAAGA

GAGGCCTGCAATAAAGCACC

XLOC_000002

GNS1/SUR4

GCTTCCTCACCCTCACTGTC

ACCCAGGGCCATGATGAAAG