Fig. 6

Distribution of upregulated and downregulated RAP transcripts with corresponding upregulated or downregulated cis-NATs under Cd, ABA, cold, and control treatments for 24 h. a RPKM fold changes at 24 h were calculated for treated samples compared with non-treated samples (0 h) in roots (light gray) and shoots (gray). The total numbers of upregulated (upper) and downregulated (lower) transcripts in roots and shoots identified by ssRNA-Seq were determined by a G-test (FDR < 0.01). b The Venn diagram shows the number of RAP transcripts with antisense transcripts upregulated under Cd exposure (green), ABA treatment (red), and cold treatment (blue)