Table 1 Mitochondrial genome lengths and intron presence. The strains of clades 2 and 3 are ordered based on the corrected mitochondrial genome length
Strain | Species | forma specialis | Clade | Introns | LV | mt length | Correcteda | |||
|---|---|---|---|---|---|---|---|---|---|---|
nad5 | cob(1) | cob(2) | atp6 | variant | (bp) | (bp) | ||||
Foc011 | F. oxysporum | f.sp. cucumerinum | 1 | yes | yes | - | - | 1 | 46476 | 33615 |
Foc013 | F. oxysporum | f.sp. cucumerinum | 1 | yes | yes | - | - | 1 | 46476 | 33615 |
Fov24500 | F. oxysporum | f.sp. vasinfectum | 1 | yes | yes | yes | yes | 1 | 48054 | 33727 |
B2 | F. oxysporum | f.sp. cubense | 1 | yes | yes | yes | yes | 1 | 49697 | 33419 |
II5 | F. oxysporum | f.sp. cubense | 1 | yes | yes | yes | yes | 1 | 49692 | 33414 |
Foc021 | F. oxysporum | f.sp. cucumerinum | 2 | yes | - | - | - | 2 | 50783 | 33449 |
Foc018 | F. oxysporum | f.sp. cucumerinum | 2 | yes | - | - | - | 2 | 50783 | 33449 |
Foc030 | F. oxysporum | f.sp. cucumerinum | 2 | yes | - | - | - | 2 | 50783 | 33449 |
NRRL25433 | F. oxysporum | f.sp. vasinfectum | 2 | yes | - | - | - | 1 | 44941 | 33458 |
N2 | F. oxysporum | f.sp. cubense | 2 | yes | - | - | - | 1 | 45639 | 33465 |
Foc035 | F. oxysporum | f.sp. cucumerinum | 2 | yes | - | - | - | 1 | 45706 | 33477 |
Fon002 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 1 | 45677 | 33477 |
Foc037 | F. oxysporum | f.sp. cucumerinum | 2 | yes | - | - | - | 1 | 45705 | 33479 |
Foc015 | F. oxysporum | f.sp. cucumerinum | 2 | yes | - | - | - | 1 | 45712 | 33486 |
Fom016 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 1 | 45538 | 33487 |
Fom013 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 1 | 45538 | 33487 |
Fom005 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 1 | 45538 | 33487 |
Fom012 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 1 | 45538 | 33487 |
NRRL54005 | F. oxysporum | f.sp. raphani | 2 | yes | - | - | - | 1 | 45536 | 33487 |
Fom004 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 1 | 45538 | 33487 |
Fom006 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 1 | 45538 | 33487 |
NRRL37622 | F. oxysporum | f.sp. pisi | 2 | yes | - | - | - | 3 | 39941 | 33490 |
Fom009 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 3 | 38736 | 33492 |
Fom011 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 3 | 38736 | 33492 |
Fom010 | F. oxysporum | f.sp. melonis | 2 | yes | - | - | - | 3 | 38736 | 33492 |
Fod008 | F. oxysporum | f.sp. dianthi | 2 | yes | - | - | - | 1 | 45694 | 33498 |
Fod001 | F. oxysporum | f.sp. dianthi | 2 | yes | - | - | - | 1 | 44947 | 33498 |
Foc001 | F. oxysporum | f.sp. cucumerinum | 2 | yes | - | - | - | 1 | 45741 | 33509 |
Fon015 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 1 | 45708 | 33514 |
Fon019 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 2 | 50087 | 33514 |
Fon020 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 1 | 45752 | 33526 |
Fon005 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 1 | 45752 | 33526 |
Fon010 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 1 | 45752 | 33526 |
Fon021 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 1 | 45752 | 33526 |
Fon013 | F. oxysporum | f.sp. niveum | 2 | yes | - | - | - | 2 | 50795 | 33527 |
NRRL54008 | F. oxysporum | f.sp. conglutinans | 2 | yes | - | - | - | 2 | 50023 | 33534 |
Forc031 | F. oxysporum | f.sp. radicis-cucumerinum | 3 | yes | yes | - | - | 1 | 47541 | 33667 |
DF023 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52324 | 33667 |
Fo47 | F. oxysporum | 3 | yes | yes | - | - | 1 | 47547 | 33667 | |
Forc024 | F. oxysporum | f.sp. radicis-cucumerinum | 3 | yes | yes | - | - | 1 | 47541 | 33667 |
Forc016 | F. oxysporum | f.sp. radicis-cucumerinum | 3 | yes | yes | - | - | 1 | 47541 | 33667 |
NRRL54003 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 1 | 47588 | 33674 |
UASWS AC1 | F. oxysporum | 3 | yes | yes | - | - | 1 | 47598 | 33682 | |
DF038 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 1 | 47562 | 33688 |
DF062 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 1 | 47562 | 33688 |
Fol016 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 1 | 47562 | 33688 |
NRRL26406 | F. oxysporum | f.sp. melonis | 3 | yes | yes | - | - | 1 | 47444 | 33688 |
Fol004 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
Fol014 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
Fol4287 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
Fol038 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
DF041 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
Fol018 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
Fol002 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
Fol026 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
DF040 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
Fol029 | F. oxysporum | f.sp. lycopersici | 3 | yes | yes | - | - | 2 | 52352 | 33694 |
MN14 | F. oxysporum | 3 | yes | yes | - | - | 1 | 47573 | 33696 | |
F11 | F. oxysporum | f.sp. cumini | 3 | yes | yes | - | - | 1 | 47409 | 33704 |
NRRL26381 | F. oxysporum | f.sp. radicis-lycopersici | 3 | yes | yes | - | - | 1 | 47263 | 33707 |
FOSC3-a | F. oxysporum | 3 | yes | yes | yes | - | 2 | 53639 | 33727 | |
JCM11502 | F. commune | - | yes | - | - | - | 1 | 47526 | 33565 | |
ITEM2287 | F. proliferatum | - | - | - | - | - | 1 | 46555 | 33558 | |
ITEM2400 | F. proliferatum | - | - | - | - | - | 1 | 46549 | 33549 | |