TY - JOUR AU - Fraser, C. M. AU - Gocayne, J. D. AU - White, O. AU - Adams, M. D. AU - Clayton, R. A. AU - Fleischmann, R. D. PY - 1995 DA - 1995// TI - The minimal gene complement of Mycoplasma genitalium JO - Science VL - 270 UR - https://doi.org/10.1126/science.270.5235.397 DO - 10.1126/science.270.5235.397 ID - Fraser1995 ER - TY - JOUR AU - Baba, T. AU - Ara, T. AU - Hasegawa, M. AU - Takai, Y. AU - Okumura, Y. AU - Baba, M. PY - 2006 DA - 2006// TI - Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection JO - Mol Syst Biol VL - 2 UR - https://doi.org/10.1038/msb4100050 DO - 10.1038/msb4100050 ID - Baba2006 ER - TY - JOUR AU - Commichau, F. M. AU - Pietack, N. AU - Stulke, J. PY - 2013 DA - 2013// TI - Essential genes in Bacillus subtilis: a re-evaluation after ten years JO - Mol BioSyst VL - 9 UR - https://doi.org/10.1039/c3mb25595f DO - 10.1039/c3mb25595f ID - Commichau2013 ER - TY - JOUR AU - Liberati, N. T. AU - Urbach, J. M. AU - Miyata, S. AU - Lee, D. G. AU - Drenkard, E. AU - Wu, G. PY - 2006 DA - 2006// TI - An ordered, nonredundant library of Pseudomonas aeruginosa strain PA14 transposon insertion mutants JO - Proc Natl Acad Sci U S A VL - 103 UR - https://doi.org/10.1073/pnas.0511100103 DO - 10.1073/pnas.0511100103 ID - Liberati2006 ER - TY - JOUR AU - Hooven, T. A. AU - Catomeris, A. J. AU - Akabas, L. H. AU - Randis, T. M. AU - Maskell, D. J. AU - Peters, S. E. PY - 2016 DA - 2016// TI - The essential genome of Streptococcus agalactiae JO - BMC Genomics VL - 17 UR - https://doi.org/10.1186/s12864-016-2741-z DO - 10.1186/s12864-016-2741-z ID - Hooven2016 ER - TY - JOUR AU - Luo, H. AU - Lin, Y. AU - Gao, F. AU - Zhang, C. T. AU - Zhang, R. PY - 2014 DA - 2014// TI - DEG 10, an update of the database of essential genes that includes both protein-coding genes and noncoding genomic elements JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1131 DO - 10.1093/nar/gkt1131 ID - Luo2014 ER - TY - JOUR AU - Koonin, E. V. PY - 2003 DA - 2003// TI - Comparative genomics, minimal gene-sets and the last universal common ancestor JO - Nat Rev Microbiol VL - 1 UR - https://doi.org/10.1038/nrmicro751 DO - 10.1038/nrmicro751 ID - Koonin2003 ER - TY - JOUR AU - Gerdes, S. AU - Edwards, R. AU - Kubal, M. AU - Fonstein, M. AU - Stevens, R. AU - Osterman, A. PY - 2006 DA - 2006// TI - Essential genes on metabolic maps JO - Curr Opin Biotechnol VL - 17 UR - https://doi.org/10.1016/j.copbio.2006.08.006 DO - 10.1016/j.copbio.2006.08.006 ID - Gerdes2006 ER - TY - JOUR AU - Butt, A. M. AU - Nasrullah, I. AU - Tahir, S. AU - Tong, Y. PY - 2012 DA - 2012// TI - Comparative genomics analysis of Mycobacterium ulcerans for the identification of putative essential genes and therapeutic candidates JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0043080 DO - 10.1371/journal.pone.0043080 ID - Butt2012 ER - TY - JOUR AU - Seo, S. W. AU - Yang, J. AU - Min, B. E. AU - Jang, S. AU - Lim, J. H. AU - Lim, H. G. PY - 2013 DA - 2013// TI - Synthetic biology: tools to design microbes for the production of chemicals and fuels JO - Biotechnol Adv VL - 31 UR - https://doi.org/10.1016/j.biotechadv.2013.03.012 DO - 10.1016/j.biotechadv.2013.03.012 ID - Seo2013 ER - TY - JOUR AU - Sauer, M. AU - Mattanovich, D. PY - 2012 DA - 2012// TI - Construction of microbial cell factories for industrial bioprocesses JO - J Chem Technol Biotechnol VL - 87 UR - https://doi.org/10.1002/jctb.3711 DO - 10.1002/jctb.3711 ID - Sauer2012 ER - TY - JOUR AU - Foley, P. L. AU - Shuler, M. L. PY - 2010 DA - 2010// TI - Considerations for the design and construction of a synthetic platform cell for biotechnological applications JO - Biotechnol Bioeng VL - 105 UR - https://doi.org/10.1002/bit.22575 DO - 10.1002/bit.22575 ID - Foley2010 ER - TY - JOUR AU - Hashimoto, M. AU - Ichimura, T. AU - Mizoguchi, H. AU - Tanaka, K. AU - Fujimitsu, K. AU - Keyamura, K. PY - 2005 DA - 2005// TI - Cell size and nucleoid organization of engineered Escherichia coli cells with a reduced genome JO - Mol Microbiol VL - 55 UR - https://doi.org/10.1111/j.1365-2958.2004.04386.x DO - 10.1111/j.1365-2958.2004.04386.x ID - Hashimoto2005 ER - TY - JOUR AU - Mizoguchi, H. AU - Sawano, Y. AU - Kato, J. AU - Mori, H. PY - 2008 DA - 2008// TI - Superpositioning of deletions promotes growth of Escherichia coli with a reduced genome JO - DNA Res VL - 15 UR - https://doi.org/10.1093/dnares/dsn019 DO - 10.1093/dnares/dsn019 ID - Mizoguchi2008 ER - TY - JOUR AU - Ara, K. AU - Ozaki, K. AU - Nakamura, K. AU - Yamane, K. AU - Sekiguchi, J. AU - Ogasawara, N. PY - 2007 DA - 2007// TI - Bacillus Minimum genome factory: effective utilization of microbial genome information JO - Biotechnol Appl Biochem VL - 46 ID - Ara2007 ER - TY - JOUR AU - Unthan, S. AU - Baumgart, M. AU - Radek, A. AU - Herbst, M. AU - Siebert, D. AU - Bruhl, N. PY - 2015 DA - 2015// TI - Chassis organism from Corynebacterium glutamicum--a top-down approach to identify and delete irrelevant gene clusters JO - Biotechnol J VL - 10 UR - https://doi.org/10.1002/biot.201400041 DO - 10.1002/biot.201400041 ID - Unthan2015 ER - TY - JOUR AU - Komatsu, M. AU - Uchiyama, T. AU - Omura, S. AU - Cane, D. E. AU - Ikeda, H. PY - 2010 DA - 2010// TI - Genome-minimized Streptomyces host for the heterologous expression of secondary metabolism JO - Proc Natl Acad Sci U S A VL - 107 UR - https://doi.org/10.1073/pnas.0914833107 DO - 10.1073/pnas.0914833107 ID - Komatsu2010 ER - TY - JOUR AU - Gomez-Escribano, J. P. AU - Bibb, M. J. PY - 2011 DA - 2011// TI - Engineering Streptomyces coelicolor for heterologous expression of secondary metabolite gene clusters JO - Microb Biotechnol VL - 4 UR - https://doi.org/10.1111/j.1751-7915.2010.00219.x DO - 10.1111/j.1751-7915.2010.00219.x ID - Gomez-Escribano2011 ER - TY - JOUR AU - Juhas, M. AU - Reuss, D. R. AU - Zhu, B. AU - Commichau, F. M. PY - 2014 DA - 2014// TI - Bacillus subtilis and Escherichia coli essential genes and minimal cell factories after one decade of genome engineering JO - Microbiology VL - 160 UR - https://doi.org/10.1099/mic.0.079376-0 DO - 10.1099/mic.0.079376-0 ID - Juhas2014 ER - TY - JOUR AU - Vickers, C. E. AU - Blank, L. M. AU - Kromer, J. O. PY - 2010 DA - 2010// TI - Grand challenge commentary: chassis cells for industrial biochemical production JO - Nat Chem Biol VL - 6 UR - https://doi.org/10.1038/nchembio.484 DO - 10.1038/nchembio.484 ID - Vickers2010 ER - TY - JOUR AU - Nikel, P. I. AU - Martinez-Garcia, E. AU - Lorenzo, V. PY - 2014 DA - 2014// TI - Biotechnological domestication of pseudomonads using synthetic biology JO - Nat Rev Microbiol VL - 12 UR - https://doi.org/10.1038/nrmicro3253 DO - 10.1038/nrmicro3253 ID - Nikel2014 ER - TY - JOUR AU - Martinez-Garcia, E. AU - Nikel, P. I. AU - Aparicio, T. AU - Lorenzo, V. PY - 2014 DA - 2014// TI - Pseudomonas 2.0: Genetic upgrading of P. putida KT2440 as an enhanced host for heterologous gene expression JO - Microb Cell Factories VL - 13 UR - https://doi.org/10.1186/s12934-014-0159-3 DO - 10.1186/s12934-014-0159-3 ID - Martinez-Garcia2014 ER - TY - JOUR AU - Chen, Y. W. AU - Shen, X. M. AU - Peng, H. S. AU - Hu, H. B. AU - Wang, W. AU - Zhang, X. H. PY - 2015 DA - 2015// TI - Comparative genomic analysis and phenazine production of Pseudomonas chlororaphis, a plant growth-promoting rhizobacterium JO - Genom Data VL - 4 UR - https://doi.org/10.1016/j.gdata.2015.01.006 DO - 10.1016/j.gdata.2015.01.006 ID - Chen2015 ER - TY - JOUR AU - Liu, H. M. AU - Dong, D. AU - Peng, H. S. AU - Zhang, X. H. AU - Xu, Y. Q. PY - 2006 DA - 2006// TI - Genetic diversity of phenazine- and pyoluteorin-producing pseudomonads isolated from green pepper rhizosphere JO - Arch Microbiol VL - 185 UR - https://doi.org/10.1007/s00203-005-0072-6 DO - 10.1007/s00203-005-0072-6 ID - Liu2006 ER - TY - JOUR AU - Shen, X. M. AU - Hu, H. B. AU - Peng, H. S. AU - Wang, W. AU - Zhang, X. H. PY - 2013 DA - 2013// TI - Comparative genomic analysis of four representative plant growth-promoting rhizobacteria in Pseudomonas JO - BMC Genomics VL - 14 UR - https://doi.org/10.1186/1471-2164-14-271 DO - 10.1186/1471-2164-14-271 ID - Shen2013 ER - TY - JOUR AU - Liu, H. M. AU - He, Y. W. AU - Jiang, H. AU - Peng, H. S. AU - Huang, X. Q. AU - Zhang, X. H. PY - 2007 DA - 2007// TI - Characterization of a phenazine-producing strain Pseudomonas chlororaphis GP72 with broad-spectrum antifungal activity from green pepper rhizosphere JO - Curr Microbiol VL - 54 UR - https://doi.org/10.1007/s00284-006-0444-4 DO - 10.1007/s00284-006-0444-4 ID - Liu2007 ER - TY - JOUR AU - Pierson, L. S. AU - Pierson, E. A. PY - 2010 DA - 2010// TI - Metabolism and function of phenazines in bacteria: impacts on the behavior of bacteria in the environment and biotechnological processes JO - Appl Microbiol Biotechnol VL - 86 UR - https://doi.org/10.1007/s00253-010-2509-3 DO - 10.1007/s00253-010-2509-3 ID - Pierson2010 ER - TY - JOUR AU - Laursen, J. B. AU - Nielsen, J. PY - 2004 DA - 2004// TI - Phenazine natural products: biosynthesis, synthetic analogues, and biological activity JO - Chem Rev VL - 104 UR - https://doi.org/10.1021/cr020473j DO - 10.1021/cr020473j ID - Laursen2004 ER - TY - JOUR AU - Mavrodi, D. V. AU - Blankenfeldt, W. AU - Thomashow, L. S. PY - 2006 DA - 2006// TI - Phenazine compounds in fluorescent Pseudomonas spp. biosynthesis and regulation JO - Annu Rev Phytopathol VL - 44 UR - https://doi.org/10.1146/annurev.phyto.44.013106.145710 DO - 10.1146/annurev.phyto.44.013106.145710 ID - Mavrodi2006 ER - TY - JOUR AU - Rabaey, K. AU - Boon, N. AU - Hofte, M. AU - Verstraete, W. PY - 2005 DA - 2005// TI - Microbial phenazine production enhances electron transfer in biofuel cells JO - Environ Sci Technol VL - 39 UR - https://doi.org/10.1021/es048563o DO - 10.1021/es048563o ID - Rabaey2005 ER - TY - JOUR AU - Cimmino, A. AU - Evidente, A. AU - Mathieu, V. AU - Andolfi, A. AU - Lefranc, F. AU - Kornienko, A. PY - 2012 DA - 2012// TI - Phenazines and cancer JO - Nat Prod Rep VL - 29 UR - https://doi.org/10.1039/c2np00079b DO - 10.1039/c2np00079b ID - Cimmino2012 ER - TY - JOUR AU - Liu, H. M. AU - Yan, A. AU - Zhang, X. H. AU - Xu, Y. Q. PY - 2008 DA - 2008// TI - Phenazine-1-carboxylic acid biosynthesis in Pseudomonas chlororaphis GP72 is positively regulated by the sigma factor RpoN JO - World J Microbiol Biotechnol VL - 24 UR - https://doi.org/10.1007/s11274-008-9655-0 DO - 10.1007/s11274-008-9655-0 ID - Liu2008 ER - TY - JOUR AU - Huang, L. AU - Chen, M. M. AU - Wang, W. AU - Hu, H. B. AU - Peng, H. S. AU - Xu, Y. Q. PY - 2011 DA - 2011// TI - Enhanced production of 2-hydroxyphenazine in Pseudomonas chlororaphis GP72 JO - Appl Microbiol Biotechnol VL - 89 UR - https://doi.org/10.1007/s00253-010-2863-1 DO - 10.1007/s00253-010-2863-1 ID - Huang2011 ER - TY - JOUR AU - Liu, K. Q. AU - Hu, H. B. AU - Wang, W. AU - Zhang, X. H. PY - 2016 DA - 2016// TI - Genetic engineering of Pseudomonas chlororaphis GP72 for the enhanced production of 2-hydroxyphenazine JO - Microb Cell Factories VL - 15 UR - https://doi.org/10.1186/s12934-016-0529-0 DO - 10.1186/s12934-016-0529-0 ID - Liu2016 ER - TY - JOUR AU - Silby, M. W. AU - Winstanley, C. AU - Godfrey, S. A. AU - Levy, S. B. AU - Jackson, R. W. PY - 2011 DA - 2011// TI - Pseudomonas genomes: diverse and adaptable JO - FEMS Microbiol Rev VL - 35 UR - https://doi.org/10.1111/j.1574-6976.2011.00269.x DO - 10.1111/j.1574-6976.2011.00269.x ID - Silby2011 ER - TY - JOUR AU - Yan, Y. L. AU - Yang, J. AU - Dou, Y. T. AU - Chen, M. AU - Ping, S. Z. AU - Peng, J. P. PY - 2008 DA - 2008// TI - Nitrogen fixation island and rhizosphere competence traits in the genome of root-associated Pseudomonas stutzeri A1501 JO - Proc Natl Acad Sci U S A VL - 105 UR - https://doi.org/10.1073/pnas.0801093105 DO - 10.1073/pnas.0801093105 ID - Yan2008 ER - TY - JOUR AU - Mushegian, A. R. AU - Koonin, E. V. PY - 1996 DA - 1996// TI - A minimal gene set for cellular life derived by comparison of complete bacterial genomes JO - Proc Natl Acad Sci U S A VL - 93 UR - https://doi.org/10.1073/pnas.93.19.10268 DO - 10.1073/pnas.93.19.10268 ID - Mushegian1996 ER - TY - JOUR AU - Shao, Y. C. AU - He, X. Y. AU - Harrison, E. M. AU - Tai, C. AU - Ou, H. Y. AU - Rajakumar, K. PY - 2010 DA - 2010// TI - mGenomeSubtractor: a web-based tool for parallel in silico subtractive hybridization analysis of multiple bacterial genomes JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkq326 DO - 10.1093/nar/gkq326 ID - Shao2010 ER - TY - JOUR AU - Xavier, J. C. AU - Patil, K. R. AU - Rocha, I. PY - 2014 DA - 2014// TI - Systems biology perspectives on minimal and simpler cells JO - Microbiol Mol Biol Rev VL - 78 UR - https://doi.org/10.1128/MMBR.00050-13 DO - 10.1128/MMBR.00050-13 ID - Xavier2014 ER - TY - JOUR AU - Duffield, M. AU - Cooper, I. AU - McAlister, E. AU - Bayliss, M. AU - Ford, D. AU - Oyston, P. PY - 2010 DA - 2010// TI - Predicting conserved essential genes in bacteria: in silico identification of putative drug targets JO - Mol BioSyst VL - 6 UR - https://doi.org/10.1039/c0mb00001a DO - 10.1039/c0mb00001a ID - Duffield2010 ER - TY - JOUR AU - Smith, C. L. AU - Weiss, B. L. AU - Aksoy, S. AU - Runyen-Janecky, L. J. PY - 2013 DA - 2013// TI - Characterization of the achromobactin iron acquisition operon in Sodalis glossinidius JO - Appl Environ Microbiol VL - 79 UR - https://doi.org/10.1128/AEM.03959-12 DO - 10.1128/AEM.03959-12 ID - Smith2013 ER - TY - JOUR AU - Castagnola, A. AU - Stock, S. P. PY - 2014 DA - 2014// TI - Common virulence factors and tissue targets of entomopathogenic bacteria for biological control of lepidopteran pests JO - Insects VL - 5 UR - https://doi.org/10.3390/insects5010139 DO - 10.3390/insects5010139 ID - Castagnola2014 ER - TY - JOUR AU - Gross, H. AU - Loper, J. E. PY - 2009 DA - 2009// TI - Genomics of secondary metabolite production by Pseudomonas spp JO - Nat Prod Rep VL - 26 UR - https://doi.org/10.1039/b817075b DO - 10.1039/b817075b ID - Gross2009 ER - TY - JOUR AU - Umbarger, H. E. AU - Brown, B. PY - 1957 DA - 1957// TI - Threonine deamination in Escherichia coli. II. Evidence for two L-threonine deaminases JO - J Bacteriol VL - 73 ID - Umbarger1957 ER - TY - JOUR AU - Csonka, L. N. PY - 1989 DA - 1989// TI - Physiological and genetic responses of bacteria to osmotic stress JO - Microbiol Rev VL - 53 ID - Csonka1989 ER - TY - JOUR AU - Nakai, T. AU - Deguchi, T. AU - Frebort, I. AU - Tanizawa, K. AU - Okajima, T. PY - 2014 DA - 2014// TI - Identification of genes essential for the biogenesis of quinohemoprotein amine dehydrogenase JO - Biochemistry VL - 53 UR - https://doi.org/10.1021/bi401625m DO - 10.1021/bi401625m ID - Nakai2014 ER - TY - JOUR AU - Rocchetta, H. L. AU - Burrows, L. L. AU - Pacan, J. C. AU - Lam, J. S. PY - 1998 DA - 1998// TI - Three rhamnosyltransferases responsible for assembly of the A-band D-rhamnan polysaccharide in Pseudomonas aeruginosa: a fourth transferase, WbpL, is required for the initiation of both A-band and B-band lipopolysaccharide synthesis JO - Mol Microbiol VL - 28 UR - https://doi.org/10.1046/j.1365-2958.1998.00871.x DO - 10.1046/j.1365-2958.1998.00871.x ID - Rocchetta1998 ER - TY - JOUR AU - Nies, D. H. PY - 1995 DA - 1995// TI - The cobalt, zinc, and cadmium efflux system CzcABC from Alcaligenes eutrophus functions as a cation-proton antiporter in Escherichia coli JO - J Bacteriol VL - 177 UR - https://doi.org/10.1128/jb.177.10.2707-2712.1995 DO - 10.1128/jb.177.10.2707-2712.1995 ID - Nies1995 ER - TY - JOUR AU - Dietrich, L. E. AU - Teal, T. K. AU - Price-Whelan, A. AU - Newman, D. K. PY - 2008 DA - 2008// TI - Redox-active antibiotics control gene expression and community behavior in divergent bacteria JO - Science VL - 321 UR - https://doi.org/10.1126/science.1160619 DO - 10.1126/science.1160619 ID - Dietrich2008 ER - TY - JOUR AU - Jarrell, K. F. AU - McBride, M. J. PY - 2008 DA - 2008// TI - The surprisingly diverse ways that prokaryotes move JO - Nat Rev Microbiol VL - 6 UR - https://doi.org/10.1038/nrmicro1900 DO - 10.1038/nrmicro1900 ID - Jarrell2008 ER - TY - JOUR AU - Rashid, M. H. AU - Kornberg, A. PY - 2000 DA - 2000// TI - Inorganic polyphosphate is needed for swimming, swarming, and twitching motilities of Pseudomonas aeruginosa JO - Proc Natl Acad Sci U S A VL - 97 UR - https://doi.org/10.1073/pnas.060030097 DO - 10.1073/pnas.060030097 ID - Rashid2000 ER - TY - JOUR AU - Chen, M. M. AU - Hx, C. AU - Peng, H. S. AU - Hu, H. B. AU - Wang, W. AU - Zhang, X. H. PY - 2014 DA - 2014// TI - Reaction kinetics for the biocatalytic conversion of phenazine-1-carboxylic acid to 2-hydroxyphenazine JO - PLoS One VL - 9 UR - https://doi.org/10.1371/journal.pone.0098537 DO - 10.1371/journal.pone.0098537 ID - Chen2014 ER - TY - JOUR AU - Bochner, B. R. PY - 2003 DA - 2003// TI - New technologies to assess genotype-phenotype relationships JO - Nat Rev Genet VL - 4 UR - https://doi.org/10.1038/nrg1046 DO - 10.1038/nrg1046 ID - Bochner2003 ER - TY - JOUR AU - Glass, J. I. AU - Assad-Garcia, N. AU - Alperovich, N. AU - Yooseph, S. AU - Lewis, M. R. AU - Maruf, M. PY - 2006 DA - 2006// TI - Essential genes of a minimal bacterium JO - Proc Natl Acad Sci U S A VL - 103 UR - https://doi.org/10.1073/pnas.0510013103 DO - 10.1073/pnas.0510013103 ID - Glass2006 ER - TY - JOUR AU - Gil, R. AU - Silva, F. J. AU - Pereto, J. AU - Moya, A. PY - 2004 DA - 2004// TI - Determination of the core of a minimal bacterial gene set JO - Microbiol Mol Biol Rev VL - 68 UR - https://doi.org/10.1128/MMBR.68.3.518-537.2004 DO - 10.1128/MMBR.68.3.518-537.2004 ID - Gil2004 ER - TY - JOUR AU - Ji, Y. AU - Zhang, B. AU - Van, S. F. AU - Horn, W. P. AU - Woodnutt, G. PY - 2001 DA - 2001// TI - Identification of critical staphylococcal genes using conditional phenotypes generated by antisense RNA JO - Science VL - 293 UR - https://doi.org/10.1126/science.1063566 DO - 10.1126/science.1063566 ID - Ji2001 ER - TY - JOUR AU - Hoang, T. T. AU - Karkhoff-Schweizer, R. R. AU - Kutchma, A. J. AU - Schweizer, H. P. PY - 1998 DA - 1998// TI - A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants JO - Gene VL - 212 UR - https://doi.org/10.1016/S0378-1119(98)00130-9 DO - 10.1016/S0378-1119(98)00130-9 ID - Hoang1998 ER - TY - JOUR AU - Quenee, L. AU - Lamotte, D. AU - Polack, B. PY - 2005 DA - 2005// TI - Combined sacB-based negative selection and cre-lox antibiotic marker recycling for efficient gene deletion in Pseudomonas aeruginosa JO - BioTechniques VL - 38 UR - https://doi.org/10.2144/05381ST01 DO - 10.2144/05381ST01 ID - Quenee2005 ER - TY - JOUR AU - Martínezgarcía, E. AU - De, L. V. PY - 2011 DA - 2011// TI - Engineering multiple genomic deletions in gram-negative bacteria: analysis of the multi-resistant antibiotic profile of Pseudomonas putida KT2440 JO - Environ Microbiol VL - 13 UR - https://doi.org/10.1111/j.1462-2920.2011.02538.x DO - 10.1111/j.1462-2920.2011.02538.x ID - Martínezgarcía2011 ER - TY - JOUR AU - Ravel, J. AU - Cornelis, P. PY - 2003 DA - 2003// TI - Genomics of pyoverdine-mediated iron uptake in pseudomonads JO - Trends Microbiol VL - 11 UR - https://doi.org/10.1016/S0966-842X(03)00076-3 DO - 10.1016/S0966-842X(03)00076-3 ID - Ravel2003 ER - TY - JOUR AU - Mossialos, D. AU - Ochsner, U. AU - Baysse, C. AU - Chablain, P. AU - Pirnay, J. P. AU - Koedam, N. PY - 2002 DA - 2002// TI - Identification of new, conserved, non-ribosomal peptide synthetases from fluorescent pseudomonads involved in the biosynthesis of the siderophore pyoverdine JO - Mol Microbiol VL - 45 UR - https://doi.org/10.1046/j.1365-2958.2002.03120.x DO - 10.1046/j.1365-2958.2002.03120.x ID - Mossialos2002 ER - TY - JOUR AU - Moon, C. D. AU - Zhang, X. X. AU - Matthijs, S. AU - Schafer, M. AU - Budzikiewicz, H. AU - Rainey, P. B. PY - 2008 DA - 2008// TI - Genomic, genetic and structural analysis of pyoverdine-mediated iron acquisition in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25 JO - BMC Microbiol VL - 8 UR - https://doi.org/10.1186/1471-2180-8-7 DO - 10.1186/1471-2180-8-7 ID - Moon2008 ER - TY - JOUR AU - Yu, B. J. AU - Sung, B. H. AU - Koob, M. D. AU - Lee, C. H. AU - Lee, J. H. AU - Lee, W. S. PY - 2002 DA - 2002// TI - Minimization of the Escherichia coli genome using a Tn5-targeted Cre/loxP excision system JO - Nat Biotechnol VL - 20 UR - https://doi.org/10.1038/nbt740 DO - 10.1038/nbt740 ID - Yu2002 ER - TY - JOUR AU - Yildiz, F. H. AU - Schoolnik, G. K. PY - 1999 DA - 1999// TI - Vibrio cholerae O1 el tor: identification of a gene cluster required for the rugose colony type, exopolysaccharide production, chlorine resistance, and biofilm formation JO - Proc Natl Acad Sci U S A VL - 96 UR - https://doi.org/10.1073/pnas.96.7.4028 DO - 10.1073/pnas.96.7.4028 ID - Yildiz1999 ER - TY - JOUR AU - Spiers, A. J. AU - Kahn, S. G. AU - Bohannon, J. AU - Travisano, M. AU - Rainey, P. B. PY - 2002 DA - 2002// TI - Adaptive divergence in experimental populations of Pseudomonas fluorescens. I. Genetic and phenotypic bases of wrinkly spreader fitness JO - Genetics VL - 161 ID - Spiers2002 ER - TY - JOUR AU - Friedman, L. AU - Kolter, R. PY - 2004 DA - 2004// TI - Genes involved in matrix formation in Pseudomonas aeruginosa PA14 biofilms JO - Mol Microbiol VL - 51 UR - https://doi.org/10.1046/j.1365-2958.2003.03877.x DO - 10.1046/j.1365-2958.2003.03877.x ID - Friedman2004 ER - TY - JOUR AU - Dasgupta, N. AU - Wolfgang, M. C. AU - Goodman, A. L. AU - Arora, S. K. AU - Jyot, J. AU - Lory, S. PY - 2003 DA - 2003// TI - A four-tiered transcriptional regulatory circuit controls flagellar biogenesis in Pseudomonas aeruginosa JO - Mol Microbiol VL - 50 UR - https://doi.org/10.1046/j.1365-2958.2003.03740.x DO - 10.1046/j.1365-2958.2003.03740.x ID - Dasgupta2003 ER - TY - JOUR AU - Deziel, E. AU - Comeau, Y. AU - Villemur, R. PY - 2001 DA - 2001// TI - Initiation of biofilm formation by Pseudomonas aeruginosa 57RP correlates with emergence of hyperpiliated and highly adherent phenotypic variants deficient in swimming, swarming, and twitching motilities JO - J Bacteriol VL - 183 UR - https://doi.org/10.1128/JB.183.4.1195-1204.2001 DO - 10.1128/JB.183.4.1195-1204.2001 ID - Deziel2001 ER - TY - JOUR AU - Choi, Y. H. AU - Lee, J. S. AU - Yun, S. AU - Baik, H. S. PY - 2015 DA - 2015// TI - A LuxR-type transcriptional regulator, PsyR, coordinates regulation of pathogenesis-related genes in Pseudomonas syringae pv. tabaci JO - J Life Sci VL - 25 UR - https://doi.org/10.5352/JLS.2015.25.2.136 DO - 10.5352/JLS.2015.25.2.136 ID - Choi2015 ER - TY - JOUR AU - Chugani, S. A. AU - Whiteley, M. AU - Lee, K. M. AU - D'Argenio, D. AU - Manoil, C. AU - Greenberg, E. P. PY - 2001 DA - 2001// TI - QscR, a modulator of quorum-sensing signal synthesis and virulence in Pseudomonas aeruginosa JO - Proc Natl Acad Sci U S A VL - 98 UR - https://doi.org/10.1073/pnas.051624298 DO - 10.1073/pnas.051624298 ID - Chugani2001 ER - TY - JOUR AU - Visca, P. AU - Imperi, F. AU - Lamont, I. L. PY - 2007 DA - 2007// TI - Pyoverdine siderophores: from biogenesis to biosignificance JO - Trends Microbiol VL - 15 UR - https://doi.org/10.1016/j.tim.2006.11.004 DO - 10.1016/j.tim.2006.11.004 ID - Visca2007 ER - TY - JOUR AU - Pel, M. J. AU - Dijken, A. J. AU - Bardoel, B. W. AU - Seidl, M. F. AU - Ent, S. AU - Strijp, J. A. PY - 2014 DA - 2014// TI - Pseudomonas syringae evades host immunity by degrading flagellin monomers with alkaline protease AprA JO - Mol Plant-Microbe Interact VL - 27 UR - https://doi.org/10.1094/MPMI-02-14-0032-R DO - 10.1094/MPMI-02-14-0032-R ID - Pel2014 ER - TY - JOUR AU - Bardoel, B. W. AU - Kessel, K. P. AU - Strijp, J. A. AU - Milder, F. J. PY - 2012 DA - 2012// TI - Inhibition of Pseudomonas aeruginosa virulence: characterization of the AprA-AprI interface and species selectivity JO - J Mol Biol VL - 415 UR - https://doi.org/10.1016/j.jmb.2011.11.039 DO - 10.1016/j.jmb.2011.11.039 ID - Bardoel2012 ER - TY - JOUR AU - Guzzo, J. AU - Duong, F. AU - Wandersman, C. AU - Murgier, M. AU - Lazdunski, A. PY - 1991 DA - 1991// TI - The secretion genes of Pseudomonas aeruginosa alkaline protease are functionally related to those of Erwinia chrysanthemi proteases and Escherichia coli Alpha-haemolysin JO - Mol Microbiol VL - 5 UR - https://doi.org/10.1111/j.1365-2958.1991.tb02128.x DO - 10.1111/j.1365-2958.1991.tb02128.x ID - Guzzo1991 ER - TY - JOUR AU - Takaya, A. AU - Tabuchi, F. AU - Tsuchiya, H. AU - Isogai, E. AU - Yamamoto, T. PY - 2008 DA - 2008// TI - Negative regulation of quorum-sensing systems in Pseudomonas aeruginosa by ATP-dependent Lon protease JO - J Bacteriol VL - 190 UR - https://doi.org/10.1128/JB.01873-07 DO - 10.1128/JB.01873-07 ID - Takaya2008 ER - TY - JOUR AU - Rij, E. T. AU - Wesselink, M. AU - Chin-A-Woeng, T. F. C. AU - Bloemberg, G. V. AU - Lugtenberg, B. J. J. PY - 2004 DA - 2004// TI - Influence of environmental conditions on the production of phenazine-1-carboxamide by Pseudomonas chlororaphis PCL1391 JO - Mol Plant-Microbe Interact VL - 17 UR - https://doi.org/10.1094/MPMI.2004.17.5.557 DO - 10.1094/MPMI.2004.17.5.557 ID - Rij2004 ER - TY - JOUR AU - Pierson, L. S. AU - Keppenne, V. D. AU - Wood, D. W. PY - 1994 DA - 1994// TI - Phenazine antibiotic biosynthesis in Pseudomonas aureofaciens 30-84 is regulated by PhzR in response to cell density JO - J Bacteriol VL - 176 UR - https://doi.org/10.1128/jb.176.13.3966-3974.1994 DO - 10.1128/jb.176.13.3966-3974.1994 ID - Pierson1994 ER - TY - JOUR AU - Hoffmann, A. AU - Thimm, T. AU - Droge, M. AU - Moore, E. R. AU - Munch, J. C. AU - Tebbe, C. C. PY - 1998 DA - 1998// TI - Intergeneric transfer of conjugative and mobilizable plasmids harbored by Escherichia coli in the gut of the soil microarthropod Folsomia candida (Collembola) JO - Appl Environ Microbiol VL - 64 ID - Hoffmann1998 ER - TY - JOUR AU - Schafer, A. AU - Tauch, A. AU - Jager, W. AU - Kalinowski, J. AU - Thierbach, G. AU - Puhler, A. PY - 1994 DA - 1994// TI - Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum JO - Gene VL - 145 UR - https://doi.org/10.1016/0378-1119(94)90324-7 DO - 10.1016/0378-1119(94)90324-7 ID - Schafer1994 ER - TY - JOUR AU - Shen, X. M. AU - Chen, M. M. AU - Hu, H. B. AU - Wang, W. AU - Peng, H. S. AU - Xu, P. PY - 2012 DA - 2012// TI - Genome sequence of Pseudomonas chlororaphis GP72, a root-colonizing biocontrol strain JO - J Bacteriol VL - 194 UR - https://doi.org/10.1128/JB.06713-11 DO - 10.1128/JB.06713-11 ID - Shen2012 ER - TY - JOUR AU - Markowitz, V. M. AU - Chen, I. M. AU - Palaniappan, K. AU - Chu, K. AU - Szeto, E. AU - Grechkin, Y. PY - 2012 DA - 2012// TI - IMG: the integrated microbial genomes database and comparative analysis system JO - Nucleic Acids Res VL - 40 UR - https://doi.org/10.1093/nar/gkr1044 DO - 10.1093/nar/gkr1044 ID - Markowitz2012 ER - TY - JOUR AU - Jacobs, M. A. AU - Alwood, A. AU - Thaipisuttikul, I. AU - Spencer, D. AU - Haugen, E. AU - Ernst, S. PY - 2003 DA - 2003// TI - Comprehensive transposon mutant library of Pseudomonas aeruginosa JO - Proc Natl Acad Sci U S A VL - 100 UR - https://doi.org/10.1073/pnas.2036282100 DO - 10.1073/pnas.2036282100 ID - Jacobs2003 ER - TY - JOUR AU - Deng, J. AU - Deng, L. AU - Su, S. AU - Zhang, M. AU - Lin, X. AU - Wei, L. PY - 2011 DA - 2011// TI - Investigating the predictability of essential genes across distantly related organisms using an integrative approach JO - Nucleic Acids Res VL - 39 UR - https://doi.org/10.1093/nar/gkq784 DO - 10.1093/nar/gkq784 ID - Deng2011 ER - TY - JOUR AU - Juhas, M. AU - Eberl, L. AU - Glass, J. I. PY - 2011 DA - 2011// TI - Essence of life: essential genes of minimal genomes JO - Trends Cell Biol VL - 21 UR - https://doi.org/10.1016/j.tcb.2011.07.005 DO - 10.1016/j.tcb.2011.07.005 ID - Juhas2011 ER - TY - JOUR AU - Kvitko, B. H. AU - Collmer, A. PY - 2011 DA - 2011// TI - Construction of Pseudomonas syringae pv. tomato DC3000 mutant and polymutant strains JO - Methods Mol Biol VL - 712 UR - https://doi.org/10.1007/978-1-61737-998-7_10 DO - 10.1007/978-1-61737-998-7_10 ID - Kvitko2011 ER - TY - JOUR AU - Bochner, B. R. AU - Gadzinski, P. AU - Panomitros, E. PY - 2001 DA - 2001// TI - Phenotype microarrays for high-throughput phenotypic testing and assay of gene function JO - Genome Res VL - 11 UR - https://doi.org/10.1101/gr.186501 DO - 10.1101/gr.186501 ID - Bochner2001 ER -