Table 1 List of large-scale chromosomal deletion mutants
Mutant | Multiple-deletion (bp) | Cumulative deletion | Genomic loci | Description | |
|---|---|---|---|---|---|
(bp) | (%) | ||||
MDS1 | 14,022 | 14,022 | 0.21 | MOK_02716-MOK_02727 | achromobactin operon |
MDS2 | 21,614 | 35,636 | 0.53 | MOK_04727-MOK_04735 | P.fluorescens insecticidal toxin operon |
MDS3 | 48,164 | 83,800 | 1.26 | MOK_01688-MOK_01707 | part of pvd operon |
MDS4 | 2548 | 86,348 | 1.30 | MOK_04926,MOK_04927 | hydrogen cyanide operon |
MDS5 | 6726 | 93,074 | 1.40 | MOK_04030-MOK_04036 | pyrrolnitrin operon |
MDS6 | 19,167 | 112,241 | 1.68 | MOK_00110-MOK_00130 | includes ccdA, azlC, tdcB, gss. mgtA |
MDS7 | 41,371 | 153,612 | 2.31 | MOK_00373-MOK_00408 | includes ltaA, gbcAB, proXWV, betTIBA |
MDS8 | 18,221 | 171,833 | 2.58 | MOK_00955-MOK_00974 | includes aurF, fabGZF, acpP, psyIR, ada |
MDS9 | 24,416 | 196,249 | 2.95 | MOK_00497-MOK_00507 | includes pvdL, pvdS, atuR, atuA |
MDS10 | 38,000 | 234,249 | 3.52 | MOK_00047-MOK_00091 | includes ligT, mmsB, araD, hyi, folA |
MDS11 | 26,771 | 261,020 | 3.92 | MOK_01641-MOK_01663 | includes katG, vgrG, gstA, amiE, surE |
MDS12 | 37,633 | 298,653 | 4.48 | MOK_01720-MOK_01754 | includes str, pea operon, aphA_2, mrdA_1 |
MDS13 | 37,411 | 336,064 | 5.04 | MOK_01897-MOK_01932 | includes matP, wbp operon, lpd3, cdsA_2 |
MDS14 | 29,156 | 365,220 | 5.48 | MOK_02207-MOK_02237 | includes hisPMQJ, dam |
MDS15 | 24,108 | 389,328 | 5.84 | MOK_02626-MOK_02642 | includes dmpA, apr operon, pspAB, pueBA |
MDS16 | 28,273 | 417,601 | 6.27 | MOK_02657-MOK_02685 | includes ssuBCA, aidB, uspA, puuC, dehII |
MDS17 | 87,173 | 504,774 | 7.58 | MOK_02743-MOK_02813 | includes fabG, idnO, aofH, aidB, phoD, aofH |
MDS18 | 26,866 | 531,640 | 7.98 | MOK_02690-MOK_02714 | includes gabT, narL, glnA_3, plcN, FecR |
MDS19 | 28,745 | 560,385 | 8.41 | MOK_03695-MOK_03722 | mostly related to hypothetical protein |
MDS20 | 56,152 | 616,537 | 9.25 | MOK_05764-MOK_05802 | mostly related to hypothetical protein |
MDS21 | 40,441 | 656,978 | 9.86 | MOK_01057-MOK_01097 | czcABCRD and genes with unknown function |
MDS22 | 28,772 | 685,750 | 10.29 | MOK_00230-MOK_00246 | mostly encoding hypothetical protein |