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Table 1 Example of the binary encoding through V L B E 1, for three genomes: G 1: (-2, -1, -3), G 2: (-1, 4, 2), and G 3: (-2, -1, -4, 1, 2)

From: Phylogeny analysis from gene-order data with massive duplications

 

Adjacencies

Encoding

(-3,-2)

(-2,-1)

(-1,-3)

(2,-1)

(-1,4)

(4,2)

(2,-2)

(-1,-4)

G 1

1

01

1

0

0

0

0

0

G 2

0

00

0

1

1

1

0

0

G 3

0

11

0

0

1

0

1

1

  1. Note that (1,2) and (-2,-1) are the same adjacency