Skip to main content

Table 2 Transposons in genomes of three Apophysomyces species

From: Apophysomyces variabilis: draft genome sequence and comparison of predictive virulence determinants with other medically important Mucorales

Transposons

A. variabilis

A. elegans

A. trapeziformis

 

No of base pairs

% in genome

No of base pairs

% in genome

No of base pairs

% in genome

Class I (retro transposons)

 Ty3-gypsy

695,311

1.77

268,349

0.7

190,906

0.53

 LINE

134,077

0.34

115,891

0.3

70,527

0.21

 Ty1-copia

120,547

0.31

49,251

0.13

24,434

0.07

 LTR-Roo

114,577

0.29

34,425

0.09

39,791

0.11

 Total bases of retro transposons

1,064,512

2.7

467,916

1.2

325,658

0.91

Class II (DNA transposons)

 hAT element

291,667

0.74

165,177

0.43

30,059

0.08

 Ant1

151,667

0.39

158,969

0.41

57,623

0.16

 Mariner

127,820

0.33

137,342

0.36

54,268

0.15

 MuDR

123,763

0.31

17,140

0.04

14,817

0.04

 Helitron

103,738

0.26

67,336

0.18

52,081

0.15

 CACTA elements

70,122

0.18

25,312

0.07

25,933

0.07

 ISC1316

48,806

0.12

12,292

0.03

18,902

0.05

 DDE transposon

30,481

0.08

29,761

0.08

3383

0.01

 Crypton

–

 

1037

0.002

–

 

 P element

–

 

161

0.0004

–

 

 Total bases of DNA transposons

948,064

2.4

614,527

1.6

257,066

0.72

Total number of transposon bases in genomes

2,012,576

5.1

1,082,443

2.8

582,724

1.63