Skip to main content
Fig. 4 | BMC Genomics

Fig. 4

From: XCAVATOR: accurate detection and genotyping of copy number variants from second and third generation whole-genome sequencing experiments

Fig. 4

TCGA benchmark 4 results. Panels (a-e) show the density plots of the the relationship between the l o g 2−r a t i o median values obtained from WGS and SNP-array for genomic segments detected by XCAVATOR (a), CNANorm (b), FREEC (c), HMMCopy (d) and BICSeq (e). Panels f-h report precision and recall obtained by the five tools in detecting all (f), small (g) and large (h) sCNAs identified by SNP-array data. Light grey curves represent F-measure levels (harmonic mean of precision and recall). In panel i are reported the correlation between real contamination and those estimated by THEtA using sCNAs detected by the five tools. R is the Pearson correlation coefficient

Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us