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Table 3 Summary statistics of 454 sequencing and assembly

From: A transcriptomic approach to study the effect of long-term starvation and diet composition on the expression of mitochondrial oxidative phosphorylation genes in gilthead sea bream (Sparus aurata)

 

Liver

Muscle

Hybrid

Data generation

Number of reads

812,770

691,433

1,504,203

Total Megabases

298.9

275.9

574.8

Average length of reads (bp)

368

399

382

After clean-up processing

Number of high quality reads

699,991

555,031

1,255,022

Total high quality Megabases

261.6

244.7

506.3

Average length of high quality reads (bp)

374

441

404

Assembly

Number of contigs

13,313

12,333

23,956

Average length contigs

934

1056

901

N50 contig length

1195

1364

1322

Number of Isotigs

11,545

10,599

19,530

Average length of isotigs

1208

1390

1330

N50 isotig length

1315

1491

1536

Number of Isogroups

10,033

9189

15,954