Table 1 Species-specific gene list of S. aureus complex (SAC)

SAOUHSC_01325

Unknown

+

-#

-#

–

SAOUHSC_01339

Unknown

+

–

–

–

SAOUHSC_01834

Unknown

+

–

–

–

SAOUHSC_01853

Unknown

+

–

–

–

SAOUHSC_01883

Unknown

+

-#

-#

–

SAOUHSC_02518

Unknown

+

–

–

–

SAOUHSC_02657

Unknown

+

–

–

–

SAOUHSC_02734

Unknown

+

–

–

–

SAOUHSC_02890

Unknown

+

–

–

–

SAOUHSC_02934

Unknown

+

–

–

–

SAOUHSC_00208

Unknown

+

-#

–

–

KQ76_RS08635

Unknown

+

-#

-#

–

SAOUHSC_02533

Unknown

+

–

–

–

KQ76_RS11720

Unknown

+

–

–

–

KQ76_RS13490

Unknown

+

–

–

–

KQ76_RS13520

Unknown

+

–

–

–

SAOUHSC_02332

Unknown

+

-#

-#

–

SAOUHSC_01003

Unknown

+*

–

–

–

SAOUHSC_01357

Unknown

+*

–

–

–

SAOUHSC_02705

Unknown

+*

–

–

–

SAOUHSC_00238

Unknown

+*

–

–

–

SAOUHSC_01603

Unknown

+*

–

–

–

SAOUHSC_01770

Unknown

+*

–

–

–

SAOUHSC_A02189

Unknown

+*

-#

-#

–

SAOUHSC_01765

Unknown

+*

–

–

–

KQ76_RS11950

Unknown

+*

–

–

–

SAOUHSC_02572

Unknown

+*

–

–

–

SACOL_RS11100

Unknown

+*

–

–

–

KQ76_RS10810

Unknown

+*

–

–

–

SAOUHSC_A02577

Unknown

+*

–

–

–

SAMSHR1132_RS10135

Unknown

–

+

–

–

SAMSHR1132_RS12985

NADP-dependent 3-hydroxy acid dehydrogenase

–

+

–

S. carnosus, S. condimenti (2)

SAMSHR1132_RS12990

Fermentation-respiration switch protein FrsA

–

+

–

S. simiae, S. intermmedius (5)

SAMSHR1132_RS13595

Unknown

–

+

–

S. delphini

SAMSHR1132_RS03050

Uncharacterized protein YqcI

–

+*

–

S. warneri, S. epidermidis (2)

SAMSHR1132_RS02070

Protein N-acetyltransferase, RimJ/RimL family

–

+*

–

S. capitis, S. warneri (13)

SAMSHR1132_RS13575

Carboxylesterase type B

–

+

+

–

SAMSHR1132_RS13600

Unknown

–

+

+

–

SAMSHR1132_RS04625

Unknown

–

+

+

S. simiae

ERS140266_RS13125

Unknown

–

+*

+

S. lugdunensis, S. intermedius (6)

SAOUHSC_00229

Iron-sulfur cluster repair protein ScdA

+

–

+

S. simiae, S. epidermidis (22)

SAOUHSC_00237

Methyltransferase domain protein UbiE

+

–

+

S. simiae, S. agnetis (11)

SAOUHSC_00492

Unknown

+

–

+

–

SAOUHSC_02880

4,4′-diaponeurosporenoate glycosyltransferase CrtQ

+

–

+

S. simiae, S. caprae (6)

SAOUHSC_02881

Diapolycopene oxygenase CrtP

+

–

+

S. simiae, S. capitis (16)

ERS140266_RS00255

Dehydrosqualene desaturase CrtN

+*

–

+

S. simiae, S. lugdunensis (17)

ERS140266_RS00260

Dehydrosqualene synthase CrtM

+*

–

+

S. simiae, S. capitis (8)

ERS140266_RS00275

Glycosyl-4,4′-diaponeurosporenoate acyltransferase CrtO

+*

–

+

–

ERS140266_RS02765

Unknown

+*

–

+*

–

ERS140266_RS07180

Unknown

+*

-#

+

–

SAOUHSC_00355

Uncharacterized protein YxeA

+

+

–

–

SAOUHSC_00867

Unknown

+

+

-#

–

SAMSHR1132_RS12095

Probable amino acid-proton symporter YbeC

+*

+

–

S.simiae, S. caprae (20)

SAMSHR1132_RS03980

Uncharacterized protein YwqG

+*

+

–

S. lugdunensis

SAMSHR1132_RS02265

Unknown

+*

+

-#

–