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Fig. 9 | BMC Genomics

Fig. 9

From: Lifestyle, gene gain and loss, and transcriptional remodeling cause divergence in the transcriptomes of Phytophthora infestans and Pythium ultimum during potato tuber colonization

Fig. 9

MA plots of ortholog pairs. The y-axis indicates the log2 ratio of the FPKM values of the two samples being compared (M) while the x-axis shows the log10 product of their FPKM values (A). The top six panels compare Ph. infestans (Pi) and Py. ultimum (Pu) in early and late rye, pea, and tuber. The bottom two panels compare two replicates of Ph. infestans and Py. ultimum in early rye. The pie charts indicate the fraction of genes that are up- (+) or down-regulated (−) in Ph. infestans compared to Py. ultimum based on a fold-change threshold of 3.0. Only genes with FPKM ≥ 1 in at least one species are shown

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