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Fig. 3 | BMC Genomics

Fig. 3

From: Trypanosoma cruzi specific mRNA amplification by in vitro transcription improves parasite transcriptomics in host-parasite RNA mixtures

Fig. 3

Putative DEG detection for the three analyzed methods. a Euler diagram showing the number and overlap of detected putative DEGs (FDR < 0.01) for each method (T7SL, T7dT and poly(A)+) when comparing epimastigote to trypomastigote transcriptomes, without a fold change threshold (left diagram) or at least a fold change of two (right diagram). Graphics produced on Cytoscape 3.2.0 b Scatter plot correlating epimastigote to trypomastigote fold changes (log2) for the different RNA-Seq methods; values inside the graphs represent Pearson correlation. Far right scatter plot correlates T7SL fold changes to the ones detected by our analysis of Li and collaborators data [44]

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