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Table 10 Significantly expressed A. niger N402 genes from cluster H in the expression profiling tree

From: Expression-based clustering of CAZyme-encoding genes of Aspergillus niger

 

Up/Down-regulatedc

Regulated by

 

Genea

Enzymeb

CAZy family

ΔxlnR

ΔaraR

ΔrhaR

ΔgalX

ΔamyR

This study

Literature

Reference

H-1

An04g03170

BGL

GH1

–

–

–

2.3

3.3

nd

nr

[38]

An14g01770

BGL

GH3

1.0

1.5

−1.2

1.0

1.5

nd

AmyR

[8, 38]

An11g00200 (bg1M)

BGL

GH3

–

3.7

–

–

2.2

nd

nr

[38]

An12g02550 (faeC)

FAE

CE1

–

–

–

–

–

nd

nr

[39]

An12g10390 (faeB)

FAE

SF1d

–

2.4

−2.8

1.1

6.5

RhaR

AraR, GaaR, RhaR

[10, 34, 84]

H-2

An15g04570

LPMO

AA9

–

−2.7

1.3

1.3

–

AraR

nr

[38]

An14g04200 (rhgB)

RHG

GH28

–

–

–

–

–

nd

nr

[88]

An16g09090

na

GH3

−1.1

1.2

−1.1

1.2

2.0

nd

nr

[38]

An18g03570 (bglA/bgl1)

BGL

GH3

−13.1

2.9

−2.4

1.5

101.3

XlnR

nr

[53]

An16g02100

EGL

GH5

−1.4

−1.1

1.3

1.3

1.7

nd

nr

[38]

An04g02700

AGL

GH36

–

–

1.2

1.6

–

nd

AmyR

[8, 38]

An18g04100 (gp43)

EXG

GH5

–

−5.7

−1.5

6.0

1.8

AraR

nr

[38]

An01g06120 (gdbA)

GDB

GH13

−1.2

1.0

−2.1

1.9

6.3

nd

nr

[41]

An01g10930 (agdB)

AGD

GH31

2.2

3.4

1.0

1.9

1.3

nd

AmyR

[8, 41]

An11g03120 (xynD)

BXL

GH43

−1.7

4.5

1.2

4.9

22.5

nd

nr

[38]

An06g00170 (aglA)

AGL

GH27

–

−4.2

−1.6

6.5

–

AraR

AmyR

[8, 89, 90]

An02g11150 (aglB)

AGL

GH27

−1.5

1.1

2.5

9.6

5.5

nd

XlnR

[23]

An02g13240 (agdC)

AGD

GH13

1.0

1.1

−1.2

2.8

2.4

nd

nr

[41]

An05g02410

GUS

GH2

–

1.7

1.9

4.5

3.9

nd

nr

[38]

An14g04190 (gbeA)

GBE

GH13

−1.7

1.3

−1.6

2.9

6.1

nd

nr

[41]

  1. aGenes with expression value of <50 in all studied A. niger N402 cultures are not included in the table
  2. bEnzyme codes are provided in Additional file 2
  3. cFold-change between A. niger N402 and the regulatory mutants grown on their relevant carbon source. - = expression value <50 in both N402 and regulatory mutant strain. Negative fold-changes >2.5 were considered proof of regulator function and are depicted in bold
  4. dSub-family (SF) classification of fungal FAEs according to Dilokpimol et al. [49]
  5. na no assigned or predicted function, nd not detected, nr not reported
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