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Table 10 Significantly expressed A. niger N402 genes from cluster H in the expression profiling tree

From: Expression-based clustering of CAZyme-encoding genes of Aspergillus niger

  Up/Down-regulatedc Regulated by
  Genea Enzymeb CAZy family ΔxlnR ΔaraR ΔrhaR ΔgalX ΔamyR This study Literature Reference
H-1 An04g03170 BGL GH1 2.3 3.3 nd nr [38]
An14g01770 BGL GH3 1.0 1.5 −1.2 1.0 1.5 nd AmyR [8, 38]
An11g00200 (bg1M) BGL GH3 3.7 2.2 nd nr [38]
An12g02550 (faeC) FAE CE1 nd nr [39]
An12g10390 (faeB) FAE SF1d 2.4 −2.8 1.1 6.5 RhaR AraR, GaaR, RhaR [10, 34, 84]
H-2 An15g04570 LPMO AA9 −2.7 1.3 1.3 AraR nr [38]
An14g04200 (rhgB) RHG GH28 nd nr [88]
An16g09090 na GH3 −1.1 1.2 −1.1 1.2 2.0 nd nr [38]
An18g03570 (bglA/bgl1) BGL GH3 −13.1 2.9 −2.4 1.5 101.3 XlnR nr [53]
An16g02100 EGL GH5 −1.4 −1.1 1.3 1.3 1.7 nd nr [38]
An04g02700 AGL GH36 1.2 1.6 nd AmyR [8, 38]
An18g04100 (gp43) EXG GH5 −5.7 −1.5 6.0 1.8 AraR nr [38]
An01g06120 (gdbA) GDB GH13 −1.2 1.0 −2.1 1.9 6.3 nd nr [41]
An01g10930 (agdB) AGD GH31 2.2 3.4 1.0 1.9 1.3 nd AmyR [8, 41]
An11g03120 (xynD) BXL GH43 −1.7 4.5 1.2 4.9 22.5 nd nr [38]
An06g00170 (aglA) AGL GH27 −4.2 −1.6 6.5 AraR AmyR [8, 89, 90]
An02g11150 (aglB) AGL GH27 −1.5 1.1 2.5 9.6 5.5 nd XlnR [23]
An02g13240 (agdC) AGD GH13 1.0 1.1 −1.2 2.8 2.4 nd nr [41]
An05g02410 GUS GH2 1.7 1.9 4.5 3.9 nd nr [38]
An14g04190 (gbeA) GBE GH13 −1.7 1.3 −1.6 2.9 6.1 nd nr [41]
  1. aGenes with expression value of <50 in all studied A. niger N402 cultures are not included in the table
  2. bEnzyme codes are provided in Additional file 2
  3. cFold-change between A. niger N402 and the regulatory mutants grown on their relevant carbon source. - = expression value <50 in both N402 and regulatory mutant strain. Negative fold-changes >2.5 were considered proof of regulator function and are depicted in bold
  4. dSub-family (SF) classification of fungal FAEs according to Dilokpimol et al. [49]
  5. na no assigned or predicted function, nd not detected, nr not reported