Skip to main content

Advertisement

Table 5 Significantly expressed A. niger N402 genes from cluster C in the expression profiling tree

From: Expression-based clustering of CAZyme-encoding genes of Aspergillus niger

  Up/Down-regulatedc Regulated by
  Genea Enzymeb CAZy family ΔxlnR ΔaraR ΔrhaR ΔgalX ΔamyR This study Literature Reference
C-1 An01g13610 (amyD) AMY GH13 1.2 1.3 nd nr [43]
An18g04810 (rgxC) RGX GH28 −17.1 RhaR GaaR, RhaR [15, 34, 40]
An06g00290 (lacC) LAC GH35 1.3 −1.7 −20.2 1.6 1.5 RhaR AmyR, AraR, GaaR, RhaR [15, 34, 40]
C-2 An11g04040 (pgxA) PGX GH28 nd GaaR [15, 34, 40]
An03g06740 (pgxB) PGX GH28 nd GaaR [15, 34, 40]
An02g12450 (pgxC) PGX GH28 −1.3 −3.2 RhaR AraR, GaaR [15, 34, 40]
An12g07500 (pgaX) PGX GH28 nd GaaR [15, 34, 40]
An02g00140 (xynB) BXL GH43 2.3 1.6 1.9 nd GaaR [34, 38]
An03g06310 (pmeA) PME CE8 nd GaaR, AraR, RhaR [15, 34, 71]
An14g04370 (pelA) PEL PL1 1.2 −1.2 −1.5 1.0 1.0 nd GaaR [15, 34, 72, 73]
An14g01130 (rglA) RGL PL4 nd GaaR [15, 34, 35]
C-3 An18g05620 (agdF) AGD GH31 −3.4 2.7 3.2 RhaR nr [41]
An09g02160 (rgaeA) RGAE CE12 −22.1 2.3 RhaR GaaR, RhaR [10, 34, 74]
An04g09360 (rgaeB) RGAE CE12 1.5 −38.1 2.0 RhaR GaaR, RhaR [10, 34, 39]
An01g14650 (rgxA) RGX GH28 −26.4 RhaR RhaR [10, 40]
An01g06620 RHA GH78 −1.2 1.3 −90.2 −1.1 2.8 RhaR RhaR [10, 38]
An12g05700 RHA GH78 −132.0 4.8 RhaR GaaR, RhaR [10, 34, 38]
An14g02920 (urhgA) URH GH105 2.3 −50.2 2.1 3.6 RhaR AraR, GaaR, RhaR [10, 34, 39]
An07g00240 RHA GH78 2.0 −17.0 RhaR RhaR [10, 38]
An10g00290 RHA GH78 −8.2 RhaR RhaR [10, 38]
An01g14600 XLN GH11 −13.5 RhaR nr [38]
An03g02080 (rgxB) RGX GH28 −137.7 RhaR RhaR [40]
An04g09070 RHA GH78 −2.8 1.1 −40.4 1.1 2.0 RhaR, XlnR RhaR [10, 38]
  1. aGenes with expression value of <50 in all studied A. niger N402 cultures are not included in the table
  2. bEnzyme codes are provided in Additional file 2
  3. cFold-change between A. niger N402 and the regulatory mutants grown on their relevant carbon source. - = expression value <50 in both N402 and regulatory mutant strain. Negative fold-changes >2.5 were considered as proof of regulator function and are depicted in bold
  4. nd not detected, nr not reported