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Table 6 Significantly expressed A. niger N402 genes from cluster D in the expression profiling tree

From: Expression-based clustering of CAZyme-encoding genes of Aspergillus niger

  Up/Down-regulatedc Regulated by
  Genea Enzymeb CAZy family ΔxlnR ΔaraR ΔrhaR ΔgalX ΔamyR This study Literature Reference
D-1 An02g01400 (abnB) ABN GH43 −1.6 1.4 1.6 −1.1 nd nr [39]
An11g07660 (exgD) EXG GH5 −1.2 1.0 1.2 −1.3 −1.3 nd nr [38]
An04g09890 (agsA) AGS GH13 1.4 −2.1 −1.9 nd nr [41, 75]
An18g04800 RHA GH78 1.7 1.9 nd GaaR [34, 38]
An15g01890 BGL GH3 1.4 1.4 1.0 −1.2 1.2 nd nr [38]
An13g02110 AFC GH29 nd nr [38]
An01g01340 UGH GH88 nd AraR [34, 38]
An14g05340 (urhgB) URH GH105 nd GaaR, RhaR [34, 39]
D-2 An04g06930 (amyC) AMY GH13 1.0 1.2 6.2 −3.4 AmyR AmyR [38]
  An03g06550 (glaA) GLA GH15 −2.3 −4.6 5.9 9.1 −44.4 AmyR, AraR AmyR [8, 38, 76, 77]
An11g03340 (aamA) AMY GH13 4.3 −9.2 12.8 38.4 −35.8 AmyR AmyR [41, 42]
An04g06920 (agdA) AGD GH31 −1.1 −1.2 4.3 6.7 −42.7 AmyR AmyR [8, 38, 78]
An12g02460 (agtB) AGT GH13 −3.8 AmyR nr [41]
An03g05530 XG-EGL GH12 −1.8 −1.9 −3.0 AmyR nr [4]
  1. aGenes with expression value of <50 in all studied A. niger N402 cultures are not included in the table
  2. bEnzyme codes are provided in Additional file 2
  3. cFold-change between A. niger N402 and the regulatory mutants grown on their relevant carbon source. - = expression value <50 in both N402 and regulatory mutant strain. Negative fold-changes >2.5 were considered proof of regulator function and are depicted in bold
  4. nd = not detected; nr = not reported