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Table 8 Significantly expressed A. niger N402 genes from cluster F in the expression profiling tree

From: Expression-based clustering of CAZyme-encoding genes of Aspergillus niger

 

Up/Down-regulatedc

Regulated by

 

Genea

Enzymeb

CAZy family

ΔxlnR

ΔaraR

ΔrhaR

ΔgalX

ΔamyR

This study

Literature

Reference

F-1

An02g00610

GUS

GH2

11.7

–

–

–

–

nd

nr

[38]

An09g03070 (agsE)

AGS

GH13

1.6

1.1

−2.0

−11.0

−5.8

AmyR, GalX

nr

[43, 75]

An16g02730 (abnD)

ABN

GH43

3.6

–

–

–

−2.5

AmyR

GaaR, RhaR

[15, 34, 39]

An09g00260/An09g00270 (aglC)

AGL

GH36

1.3

1.0

−3.5

1.3

1.3

RhaR

AmyR

[8, 44]

F-2

An09g05350

FAE

SF9d

1.5

–

–

–

−1.1

nd

nr

[4]

  1. aGenes with expression value of <50 in all studied A. niger N402 cultures are not included in the table
  2. bEnzyme codes are provided in Additional file 2
  3. cFold-change between A. niger N402 and the regulatory mutants grown on their relevant carbon source. - = expression value <50 in both N402 and regulatory mutant strain. Negative fold-changes >2.5 were considered proof of regulator function and are depicted in bold
  4. dSub-family (SF) classification of fungal FAEs according to Dilokpimol et al. [49]
  5. nd not detected, nr not reported
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BMC Genomics

ISSN: 1471-2164

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