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Table 1 P. freudenreichii strains included in this study. Summary of the genome sequences

From: De novo assembly of genomes from long sequence reads reveals uncharted territories of Propionibacterium freudenreichii

Strain

Sequence name

Accession number

Genome size (bp)

Genome coverage

GC%

No. of predicted genes

Note

JS

PFREUDJS001

LN997841

2,675,045

691

67%

2382

Sequenced previously [26]; 261 a

JS2

PFRJS2

LT576032

2,655,351

317

67%

2310

257 a

JS4

PFRJS4

LT576033

2,654,663

158

67%

2366

259 a

JS7

PFRJS7–1

LT618776

2,738,418

300

67%

2412

Genome with prophage; 263 a

PFRJS7–2

LT618777

2,700,482

50

67%

2355

Genome without phage

PFRJS7-ph

LT618778

37,936

60

65%

59

Circular phage

JS8

PFRJS8

LT576042

2,655,373

392

67%

2324

264 a

JS9

PFRJS9–1

LT618785

2,720,049

219

67%

2405

Additional transposase gene; 265 a

PFRJS9–2

LT618786

2,718,592

219

67%

2401

 

JS10

PFRJS10

LT576035

2,626,110

208

67%

2329

266 a

JS11

PFRJS11

LT576038

2,537,402

501

67%

2200

274 a

JS12

PFRJS12–1

LT604998

2,615,181

250

67%

2275

Additional transposase gene; 275 a

PFRJS12–2

LT576787

2,613,734

250

67%

2274

 

PFRJS12–3

LT604882

24,909

400

64%

32

Putative conjugative plasmid

JS13

PFRJS13–1

LT618779

2,537,370

210

67%

2201

11-gene insertion; 276 a

PFRJS13–2

LT618780

2,520,651

90

67%

2189

 

JS14

PFRJS14

LT593929

2,507,188

330

67%

2180

277 a

JS15

PFRJS15–1

LT618787

2,621,081

94

67%

2322

3 additional transposase genes; 281 a

PFRJS15–2

LT618788

2,616,005

94

67%

2320

Transposase gene disrupting a Type III RM methylase

JS16

RM25

CP010341

2,649,163

190

67%

2321

Sequenced previously [25]; 282 a

JS17

PFRJS17–1

LT618789

2,755,516

192

67%

2455

Duplicated transposase gene; 283 a

PFRJS17–2

LT618790

2,754,069

192

67%

2454

 

JS18

PFRJS18

LT576034

2,661,974

190

67%

2358

284 a

JS20

PFRJS20–1

LT618791

2,678,207

106

67%

2384

286 a

PFRJS20–2

LT618792

2,682,327

106

67%

2376

3 additional transposase genes; one disrupting another transposase gene

JS21

PFRJS21–1

LT618781

2,659,993

222

67%

2330

Additional transposase genes; 287 a

PFRJS21–2

LT618782

2,658,550

222

67%

2329

 

JS22

PFRJS22–1

LT599498

2,633,661

190

67%

2326

Genome with prophage; 288 a

PFRJS22-ph

LT615138

39,309

102

66%

61

Circular phage

JS23

PFRJS-23

LT618793

2,630,698

210

67%

2335

Genome with prophage; 289 a

PFRJS-23-ph

LT618794

42,723

25

65%

66

Circular phage

JS25

PFRJS25–1

LT618783

2,666,517

400

67%

2336

291 a

PFRJS25–2 pl

LT618784

35,640

800

64%

46

Putative conjugative plasmid

  1. a Strain number in the previous study [48]