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Table 1 P. freudenreichii strains included in this study. Summary of the genome sequences

From: De novo assembly of genomes from long sequence reads reveals uncharted territories of Propionibacterium freudenreichii

Strain Sequence name Accession number Genome size (bp) Genome coverage GC% No. of predicted genes Note
JS PFREUDJS001 LN997841 2,675,045 691 67% 2382 Sequenced previously [26]; 261 a
JS2 PFRJS2 LT576032 2,655,351 317 67% 2310 257 a
JS4 PFRJS4 LT576033 2,654,663 158 67% 2366 259 a
JS7 PFRJS7–1 LT618776 2,738,418 300 67% 2412 Genome with prophage; 263 a
PFRJS7–2 LT618777 2,700,482 50 67% 2355 Genome without phage
PFRJS7-ph LT618778 37,936 60 65% 59 Circular phage
JS8 PFRJS8 LT576042 2,655,373 392 67% 2324 264 a
JS9 PFRJS9–1 LT618785 2,720,049 219 67% 2405 Additional transposase gene; 265 a
PFRJS9–2 LT618786 2,718,592 219 67% 2401  
JS10 PFRJS10 LT576035 2,626,110 208 67% 2329 266 a
JS11 PFRJS11 LT576038 2,537,402 501 67% 2200 274 a
JS12 PFRJS12–1 LT604998 2,615,181 250 67% 2275 Additional transposase gene; 275 a
PFRJS12–2 LT576787 2,613,734 250 67% 2274  
PFRJS12–3 LT604882 24,909 400 64% 32 Putative conjugative plasmid
JS13 PFRJS13–1 LT618779 2,537,370 210 67% 2201 11-gene insertion; 276 a
PFRJS13–2 LT618780 2,520,651 90 67% 2189  
JS14 PFRJS14 LT593929 2,507,188 330 67% 2180 277 a
JS15 PFRJS15–1 LT618787 2,621,081 94 67% 2322 3 additional transposase genes; 281 a
PFRJS15–2 LT618788 2,616,005 94 67% 2320 Transposase gene disrupting a Type III RM methylase
JS16 RM25 CP010341 2,649,163 190 67% 2321 Sequenced previously [25]; 282 a
JS17 PFRJS17–1 LT618789 2,755,516 192 67% 2455 Duplicated transposase gene; 283 a
PFRJS17–2 LT618790 2,754,069 192 67% 2454  
JS18 PFRJS18 LT576034 2,661,974 190 67% 2358 284 a
JS20 PFRJS20–1 LT618791 2,678,207 106 67% 2384 286 a
PFRJS20–2 LT618792 2,682,327 106 67% 2376 3 additional transposase genes; one disrupting another transposase gene
JS21 PFRJS21–1 LT618781 2,659,993 222 67% 2330 Additional transposase genes; 287 a
PFRJS21–2 LT618782 2,658,550 222 67% 2329  
JS22 PFRJS22–1 LT599498 2,633,661 190 67% 2326 Genome with prophage; 288 a
PFRJS22-ph LT615138 39,309 102 66% 61 Circular phage
JS23 PFRJS-23 LT618793 2,630,698 210 67% 2335 Genome with prophage; 289 a
PFRJS-23-ph LT618794 42,723 25 65% 66 Circular phage
JS25 PFRJS25–1 LT618783 2,666,517 400 67% 2336 291 a
PFRJS25–2 pl LT618784 35,640 800 64% 46 Putative conjugative plasmid
  1. a Strain number in the previous study [48]