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Fig. 2 | BMC Genomics

Fig. 2

From: Genome sequencing of 39 Akkermansia muciniphila isolates reveals its population structure, genomic and functional diverisity, and global distribution in mammalian gut microbiotas

Fig. 2

Phylogroups of A. muciniphila. (a) Maximum likelihood phylogenetic tree based on core genome SNPs of 40 A. muciniphila isolates. The tree is inferred using RAxML with 1000 replications, with Rubritalea marina DSM 17716 as outgroup species. Bootstrap support values are shown for the separation nodes of the main phylogroups. (b) Hierarchical clustering of isolates based on whole-genome level average nucleotide identity (ANI). Pairwise ANI between isolates is shown as a heat map

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