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Table 1 Summary of RNA-Seq metrics from transcriptomes across four developmental stages of Laiwu pigs

From: Dynamic transcriptome and DNA methylome analyses on longissimus dorsi to identify genes underlying intramuscular fat content in pigs

Sample

Total reads

Mapped reads

Mapped ratio, %

Uniq mapped reads

Uniq mapped ratio, %

GC content, %

% ≥ Q30

60 d-1

33,532,956

23,886,799

71.23

22,600,471

67.40

54.87

88.37

60 d-2

39,230,000

28,092,483

71.61

26,588,906

67.78

54.53

88.43

60 d-3

36,445,032

26,013,238

71.38

24,488,820

67.19

55.48

89.10

120 d-1

34,665,986

24,908,793

71.85

23,410,399

67.53

55.01

88.67

120 d-2

34,780,852

24,399,466

70.15

22,902,426

65.85

55.43

88.48

120 d-3

33,425,342

23,754,838

71.07

22,465,927

67.21

55.37

88.53

240 d-1

33,403,006

23,859,687

71.43

22,383,982

67.01

53.83

88.66

240 d-2

34,412,034

25,331,129

73.61

23,840,969

69.28

53.35

89.17

240 d-3

34,893,280

25,348,989

72.65

23,881,912

68.44

53.08

89.18

400 d-1

42,825,118

30,631,112

71.53

28,834,821

67.33

53.24

89.21

400 d-2

36,291,654

25,749,722

70.95

24,213,599

66.72

52.91

88.47

400 d-3

36,313,474

26,147,929

72.01

24,557,825

67.63

53.48

89.06