|  | Variants | Basic coalescent | IMPUTE2 without recombination | Variants | IMPUTE2 with recombination | |||||
---|---|---|---|---|---|---|---|---|---|---|---|
Study | MAF | N (%) | Mean | (95% CI) | Mean | (95% CI) | N (%) | Mean | (95% CI) | ||
CEU | all | 41 | (100.0) | 0.92 | (0.89,0.95) | 0.90 | (0.86,0.93) | 42 | (100.0) | 0.93 | (0.89,0.96) |
 | ≤0.01 | 11 | (26.8) | 0.98 | (0.97,0.99) | 0.98 | (0.97,0.99) | 12 | (28.6) | 0.98 | (0.97,0.99) |
 | >0.01, ≤0.05 | 21 | (51.2) | 0.92 | (0.91,0.93) | 0.91 | (0.91,0.92) | 19 | (45.2) | 0.99 | (0.97,1.00) |
 | >0.05 | 9 | (22.0) | 0.84 | (0.70,0.99) | 0.75 | (0.62,0.88) | 11 | (26.2) | 0.76 | (0.68,0.85) |
AFR | all | 123 | (100.0) | 0.93 | (0.92,0.95) | 0.93 | (0.91,0.95) | 121 | (100.0) | 0.96 | (0.94,0.97) |
 | ≤0.01 | 35 | (28.5) | 0.99 | (0.98,1.00) | 0.99 | (0.98,1.00) | 37 | (30.6) | 0.99 | (0.98,1.00) |
 | >0.01, ≤0.05 | 58 | (47.2) | 0.97 | (0.96,0.98) | 0.97 | (0.96,0.97) | 56 | (46.3) | 0.96 | (0.95,0.97) |
 | >0.05 | 30 | (24.4) | 0.81 | (0.76,0.85) | 0.79 | (0.74,0.83) | 28 | (23.1) | 0.90 | (0.85,0.95) |
AMR | all | 66 | (100.0) | 0.92 | (0.90,0.95) | 0.92 | (0.89,0.94) | 67 | (100.0) | 0.96 | (0.94,0.98) |
 | ≤0.01 | 36 | (54.5) | 0.98 | (0.97,0.99) | 0.98 | (0.97,0.99) | 36 | (53.7) | 0.99 | (0.98,1.00) |
 | >0.01, ≤0.05 | 5 | (7.6) | 0.91 | (0.88,0.94) | 0.90 | (0.86,0.95) | 7 | (10.4) | 0.93 | (0.90,0.96) |
 | >0.05 | 25 | (37.9) | 0.84 | (0.79,0.89) | 0.82 | (0.76,0.87) | 24 | (35.8) | 0.93 | (0.87,0.98) |