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Table 2 General feature of H. villosa 4VS assembly

From: Sequencing flow-sorted short arm of Haynaldia villosa chromosome 4V provides insights into its molecular structure and virtual gene order

Type Sub-type Number Average length (bp) Total length (bp) % in 4VS
Protein coding gene
 Evidenced gene 1977 1301 2,571,967 1.51
Non-coding sequence
 miRNA 386 124.4 48,009 0.03
 tRNA 121 74.3 8995 0.01
 rRNA   0 0 0 0
18S 0 0 0 0
28S 0 0 0 0
5.8S 0 0 0 0
5S 0 0 0 0
 snRNA   37 112.8 4175 0
CD-box 23 108.9 2505 0
HACA-box 12 117.8 1414 0
splicing 2 128 256 0
Repetitive DNA
 DNA transposon 4,827,926 3.69
 Retrotransposon
  LTR 65,945,121 50.47
LINE 2,171,029 1.66
SINE 14,703 0.01
Other 2711 0
Unknown 135,142 0.10
 Tandem repeat 51,171 214.0 12,349,526 9.45
  1. tRNA transfer RNA; rRNA ribosomal RNA; snRNA small nucleolar RNA; TEs Transposable elements; LTR long terminal repeat; LINEs long interspersed nuclear elements; SINEs short interspersed nuclear elements