Table 3 Selected differentially down-regulated genes and their functions in S. Typhi biofilm cells
From: Transcriptomic study of Salmonella enterica subspecies enterica serovar Typhi biofilm
Gene | Gene function | Log2-fold change | p-value | q-value |
|---|---|---|---|---|
STY1856 | Regulatory protein | −2.07402 | 5.00E-05 | 0.001837 |
yiiU | FtsZ stabilizer | −2.10309 | 5.00E-05 | 0.001837 |
cspB | Cold shock protein | −2.18312 | 5.00E-05 | 0.001837 |
STY0398 | Propionate catabolism operon regulatory protein | −2.29804 | 5.00E-05 | 0.001837 |
STY0788 | Hypothetical protein | −2.35255 | 5.00E-05 | 0.001837 |
osmE | Osmotically inducible lipoprotein E | −2.36034 | 5.00E-05 | 0.001837 |
tatE | Sec-independent protein translocase protein TatE | −2.41698 | 5.00E-05 | 0.001837 |
ompX | Outer membrane protein X | −2.45886 | 2.00E-04 | 0.005683 |
yaiA | Hypothetical protein | −2.48198 | 5.00E-05 | 0.001837 |
hupA | Histone like DNA-binding protein HU-alpha | −2.59176 | 5.00E-05 | 0.001837 |
STY1982 | Hypothetical protein | −2.61628 | 5.00E-05 | 0.001837 |
STY1323 | Hypothetical protein | −2.67081 | 5.00E-05 | 0.001837 |
ompC | Outer membrane protein C | −2.75117 | 5.00E-05 | 0.001837 |
lppA | Major outer membrane lipoprotein | −2.93078 | 5.00E-05 | 0.001837 |
STY1938 | Hypothetical protein | −3.30784 | 5.00E-05 | 0.001837 |
rpsV | 30S ribosomal protein S22 | −3.30884 | 5.00E-05 | 0.001837 |
yjfO | Biofilm stress and motility protein A | −3.3313 | 5.00E-05 | 0.001837 |
cspC | Cold shock-like protein CspC | −3.34324 | 5.00E-05 | 0.001837 |
STY2264 | Hypothetical protein | −3.38655 | 5.00E-05 | 0.001837 |
dps | DNA protection during starvation protein | −3.42148 | 5.00E-05 | 0.001837 |
STY4154 | DNA-binding protein | −3.45538 | 0.00085 | 0.015693 |
ecnB | Entericidin B | −3.5082 | 5.00E-05 | 0.001837 |
STY0800 | Hypothetical protein | −3.80587 | 5.00E-05 | 0.001837 |
STY1854 | Hypothetical protein | −4.01921 | 5.00E-05 | 0.001837 |
cspE | Cold shock-like protein CspE | −4.36039 | 5.00E-05 | 0.001837 |
STY4436 | Hypothetical protein | −4.50574 | 5.00E-05 | 0.001837 |
STY0893 | Biofilm formation regulatory protein bssr | −5.12497 | 5.00E-05 | 0.001837 |
rmf | Ribosome modulation factor | −6.30581 | 5.00E-05 | 0.001837 |