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Table 2 Derivation of differentially methylated cytosines (DMCs) and differentially methylated regions (DMRs) from BS-Seq Data

From: Analyses of methylomes of upland and lowland switchgrass (Panicum virgatum) ecotypes using MeDIP-seq and BS-seq

 

CG

CHG

CHH

Cytosine sites with depth > =5

43,645,671

40,463,671

116,652,010

Cytosine sites with P < 0.05

2,476,686

2,058,714

1,611,070

DMC (Adjusted P < 0.05)

116,600

37,243

840

DMC cluster (> = 4 DMC & > =50 bps)

2832

615

4

DMR

1777

573

3

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BMC Genomics

ISSN: 1471-2164

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